Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq17 134 2e-26 seq18 87.8 2e-12 >seq17 Length=926260 Score = 134 bits (148), Expect = 2e-26 Identities = 314/473 (66%), Gaps = 3/473 (1%) Strand=Plus/Plus Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897 |||| ||||| |||||||| || ||||| || |||| | ||||| || |||||||| Sbjct 105619 TCCTGGTCCACAGTGAATTGGATAGGAGCAGAGGCGGCCATGGTACGGAGGTAGTACATG 105678 Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 61957 ||||| || ||||| || |||| || ||| ||||| ||| | ||| | | Sbjct 105679 CCCGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATCGACGTGATCTTGCCCATAGTA 105738 Query 61958 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017 || || || ||||| || | ||| ||| |||||||||||||| || | ||| ||| Sbjct 105739 GGCTCCTTCATGTGGATGTTGAGAGACTGAGACTGATCGATGAAGGCACCACGGTCAGCA 105798 Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATA 62077 ||||| | || || || || | |||||||||| ||| || |||| ||| | Sbjct 105799 GCCATCTGGATGATGGTTCGCTGAGAGATTTCCCAAACAGTCTTGTAAAGAGTCTTGGTC 105858 Query 62078 TCTTCTGGAAGGTTTGTATT---CTGAATGGATCCACCATCTGCCATAATCCTATTCTTG 62134 ||||| |||| ||| | | | || ||||| ||||| ||||| || || | |||||| Sbjct 105859 TCTTCAGGAATGTTGGGAATGCGTTGGATGGAGCCACCTTCTGCAATGATACGATTCTTC 105918 Query 62135 ATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACT 62194 || | ||| ||| | | ||| | | | |||| || || || || ||| Sbjct 105919 ATGTTCTCAGACCACAGACCCATATCGACCAGATCCTTAAGCAGCCATGGGTTGACGACT 105978 Query 62195 TGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGAC 62254 || || || |||| | || | || | ||| || || || || || || | || Sbjct 105979 TGGAACTCACCAGCGAGCACACGGCGGGAGTAGATGTTCGATGTGTATGGCTCAAAGCAC 106038 Query 62255 TCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62307 || || ||||| | || |||| || |||||||| ||||| ||||| | ||| Sbjct 106039 TCGTTGTTTCCGAGGATCTGAGAGGTAGATGCAGTTGGCATGGGTGCAATCAA 106091 Score = 125 bits (138), Expect = 9e-24 Identities = 400/612 (65%), Gaps = 14/612 (2%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 |||||||| || || |||||| | | || |||||| |||| ||||| | || || | Sbjct 106783 TCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACAGCGTC 106842 Query 63053 CACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAAT 63112 || || || | || | || || ||||| |||||||| || ||||| | ||| || Sbjct 106843 CATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGTAGAAG 106902 Query 63113 AGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATA 63172 ||||| | | | || || || || ||||| | || ||||| | | Sbjct 106903 AGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCGAAG 106962 Query 63173 ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCC 63232 | ||| | ||||| || || | || ||||| | | || || || ||||| || ||| Sbjct 106963 ACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCC 107022 Query 63233 TGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGAT 63292 || || | ||| | || ||||| || || || | | ||| ||||| | |||||| || Sbjct 107023 TGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGACCATTCGAA 107082 Query 63293 GTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGAC 63350 || || ||||| || ||| ||| || ||||||| ||| | | |||| | | Sbjct 107083 GTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCACGTTGA--GGC 107140 Query 63351 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 63410 | || || || || | || ||||| || || || || | || || ||||| || | Sbjct 107141 CAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGATACCGT 107200 Query 63411 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTG--GTGACGACTAGT 63468 | || || || || |||||| || || || ||| ||||| || | || | ||| Sbjct 107201 CAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGATGG--AGT 107258 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAA-GTAGATTGT 63527 || || || || | || || || ||||| ||||| | || | || | |||| | || Sbjct 107259 GCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACATGTAG-TCGT 107317 Query 63528 ACGTCTCAATAGCTGAGTCTATATCCCATTGA--TGAATTCCTACTGCGACACGCATTAA 63585 |||||||||| || || || || |||| ||||| || || ||||||||||| | Sbjct 107318 ACGTCTCAATGGCCTTCTCGATGTC--ATTGCCGTGAATGCCGACAGCGACACGCATCAG 107375 Query 63586 CATGTGCTGAGG 63597 |||||| || || Sbjct 107376 CATGTGTTGTGG 107387 >seq18 Length=888533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 ||||||||||| || | ||||||||| | || | |||||||| || || || Sbjct 234628 CATGCGAAATCAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGA 234687 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 32780 || ||||| || |||||||| || |||||||| ||||||||||| || || ||||| Sbjct 234688 CCTGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGACGCAAAGGAGCCGCTGAAGAAG 234747 Query 32781 ATTCCTTCTACTGCCGCAAAGGC 32803 || || || || || ||||| || Sbjct 234748 ATGCCCTCCACGGCAGCAAATGC 234770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631453492400