Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 9e-16 >seq6 Length=1708680 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||||||| || | ||||| | || || ||||||||| Sbjct 771176 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACAATCACTCTAGAGGTTGAGTCGTCT 771117 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || || || || || || || || || || || Sbjct 771116 GACACCATCGACAACGTAAAGAGCAAGATTCAAGATAAGGAGGGCATCCCTCCCGATCAG 771057 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || || || ||||| | || || | ||||||| | || |||||| Sbjct 771056 CAGCGCCTTATCTTCGCGGGTAAACAGCTCGAGGACGGTCGCACTCTTTCGGACTACAAT 770997 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || ||||| || || || ||||| Sbjct 770996 ATCCAAAAGGAGTCCACTCTGCACTTGGTGCT 770965 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 25033 CCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTG 25092 ||||||| |||| || ||||| || ||||||||||| | ||| || ||| | Sbjct 771826 CCATCACGCTCGAGGTTGAGTCCTCGGACACTATCGACAACGTCAAGAGCAAGATCCAGG 771767 Query 25093 ACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAG 25152 | || || || || || |||||||| ||||| | || || |||||||| || | |||| Sbjct 771766 ATAAGGAGGGCATCCCTCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAGCAGCTCGAAG 771707 Query 25153 ATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 | | ||||| | ||||||||| |||||||| || || || || || Sbjct 771706 ACGGCCGCACCCTCTCCGATTACAACATTCAAAAGGAGTCAACCCTCCA 771658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327635598235