Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 105 6e-18 seq29 86.0 5e-12 >seq6 Length=1708680 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || ||| | || || || || |||| || || || ||| | | Sbjct 771404 ATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTCGAATCGTCA 771345 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || ||||| |||||||||||||||||||| || ||||| Sbjct 771344 GATACCATTGATAACGTAAAGAGCAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 771285 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || || || || ||| | ||||| ||||| |||| || |||||| Sbjct 771284 CAGCGCTTGATCTTCGCAGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAAC 771225 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || | || || ||| | || | || || ||| Sbjct 771224 ATTCAGAAGGAATCTACACTCCACTTGGTTCTTCGTCTCCGTGGTGGT 771177 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || |||||||| || || || || || || || | || || |||||||| Sbjct 771776 AAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 771717 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | || || ||||||| |||||||||||||||||||||| || || ||| Sbjct 771716 CAGCTCGAAGACGGCCGCACCCTCTCCGATTACAACATTCAAAAGGAGTCAACC 771663 >seq29 Length=430389 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 22311 AGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGA 22370 |||||||||||| ||||| || || || || || || || || |||||||| ||| | || Sbjct 67474 AGACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGA 67533 Query 22371 GGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||| ||| ||| ||||||| |||||||| || || || || ||| | || || || Sbjct 67534 GGACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGT 67590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727647034985