Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6 143 5e-29 seq18 116 7e-21 seq29 84.2 4e-11 >seq6 Length=1708680 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || || || || || |||||||| || || || Sbjct 771406 CCACCACGGAGGCGGAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 771465 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||| || | |||||| || ||||| || | | || ||||| || ||| Sbjct 771466 AGGGTGCGCCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 771525 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| |||||| ||||| || || | || || || Sbjct 771526 ATGCCCTCCTTATCCTGGATCTTGCTCTTGACATTGTCGATAGTATCCGAAGACTCGACC 771585 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || ||||||||||| |||||||| |||||||| Sbjct 771586 TCCAAGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 771632 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || || || || | |||||||| || |||||||| |||||||| || || || || Sbjct 770949 TCCGCCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGGATATTGTAGTCCGA 771008 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || || || | ||| || || ||||| || || | || || ||||| || Sbjct 771009 AAGAGTGCGACCGTCCTCGAGCTGTTTACCCGCGAAGATAAGGCGCTGCTGATCGGGAGG 771068 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||| ||||| ||||||||||| ||| ||| ||||||||||| | || || || Sbjct 771069 GATGCCCTCCTTATCTTGAATCTTGCTCTTTACGTTGTCGATGGTGTCAGACGACTCAAC 771128 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || | |||||||||||| |||||||| Sbjct 771129 CTCTAGAGTGATTGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 771176 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || || || || || ||||| || || ||| Sbjct 771178 CCACCACGGAGACGAAGAACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTCAGAG 771237 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | || || || || ||| Sbjct 771238 AGAGTGCGACCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGCTGCTGATCTGGGGGA 771297 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 || || ||||||||||| || ||||| ||| ||| || ||||| |||| ||||| || Sbjct 771298 ATACCCTCCTTGTCTTGGAT-TTTGCTCTTTACGTTATCAATGGTATCTGACGATTCGAC 771356 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| ||||| ||||| ||||||||||| || ||||| Sbjct 771357 CTCGAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 771404 Score = 127 bits (140), Expect = 4e-24 Identities = 151/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | ||| || || ||||| ||||| ||||| ||||||||| Sbjct 771634 CCACCACGGAGGCGGAGGACGAGGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 771693 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| |||||||| || | | || ||||| || || Sbjct 771694 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGG 771753 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| ||||||| ||||| ||||| | || || || Sbjct 771754 ATGCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCGATAGTGTCCGAGGACTCAACC 771813 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||||| || ||||||| Sbjct 771814 TCGAGCGTGATGGTCTTGCCCGTGA 771838 >seq18 Length=888533 Score = 116 bits (128), Expect = 7e-21 Identities = 314/472 (67%), Gaps = 14/472 (3%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| |||||| | Sbjct 234324 CATGACACCAGCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 234383 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| ||| | ||||| || || Sbjct 234384 TAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCATTGTAGACCTTGGTGTTGCC 234443 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | ||| || || |||||||| |||||||||| ||| ||| | ||| Sbjct 234444 GAGAGCCAACAGCAGGCGATCGGCAACGAACTCAATGTACTGGCACATAAGGGTGGCGTT 234503 Query 10115 CATGCCAATCA-TGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173 ||| |||| | ||| |||||||| || |||| | ||| || | || | | ||| | Sbjct 234504 CATACCAAGAAGTGC-GCAGGGGAGAGCCTCGCTCAAGAACTCTTGCTCAATTGTGACAG 234562 Query 10174 CTTCCTCGACGATGCTCTTTAC---CACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 | || || |||| || || | | | || | ||||| ||| || Sbjct 234563 CCTCAGTGATGATGGCCTGGACAGACTCCTTGCTGGGGCGGTTGTT---GAGAAGAGAGA 234619 Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290 | || || | | || | || | |||||||||||| ||||| ||||||||| | Sbjct 234620 AGAGCAGGCATGCGAAATCAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGA 234679 Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCG 10349 | |||||| ||||| || || || || ||||| || |||| |||| || || ||| Sbjct 234680 ATGTCAGACCTGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGACGCA-AAGGAGCCG 234738 Query 10350 GAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA 10399 || |||||| ||||||||| | | |||||||| || | ||||| Sbjct 234739 CTGA--AGAAGATGCCCTCCACGGCAGCAAATGCGACGAGACGGTTGGCGAA 234788 Score = 84.2 bits (92), Expect = 4e-11 Identities = 183/269 (68%), Gaps = 4/269 (1%) Strand=Plus/Plus Query 10520 GAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CA 10578 |||||| || ||| |||| ||||| | |||| | |||| || ||||||| || Sbjct 234960 GAGCAGAGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCA 235019 Query 10579 TACGTGCCGAGGGG-TCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACC 10637 | |||||| |||| | || ||||| ||| |||| | | |||||||| | || Sbjct 235020 T-CGTGCCTCGGGGATTTGT-ACTTCGCCGGAAAAGCGCTCGACGAGGTTCTCGTTGACA 235077 Query 10638 ATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCG 10697 ||||| ||| | | || |||||| |||||| ||| ||||||| |||||| || ||| Sbjct 235078 ATGCCGTCGGAGGCAGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCG 235137 Query 10698 TTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAG 10757 |||| | | |||||| | ||||| | || | | ||||| | |||||| Sbjct 235138 TTCAATCGCTTGTTCCAGTCATGGAGATCCTTGGAAAGATCAATTTCCTCAGCAGTCCAG 235197 Query 10758 AAAGTGGCAACGGCCTTCTTGTACATCTG 10786 || | || |||||||||||||||| || Sbjct 235198 AAGGAAGCCTCGGCCTTCTTGTACATTTG 235226 >seq29 Length=430389 Score = 84.2 bits (92), Expect = 4e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429 |||||||| | ||| || ||||||||||| | || || || || | |||||| || Sbjct 67420 TGAATCTTGGACTTCACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTC 67361 Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || |||||||||||||||||||| |||||||| ||| Sbjct 67360 TTACCCGTGAGGGTCTTGACGAAGATCTGCATGATG 67325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621605100680