Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq6 143 5e-29
seq18 116 7e-21
seq29 84.2 4e-11
>seq6
Length=1708680
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | || || || || || || |||||||| || || ||
Sbjct 771406 CCACCACGGAGGCGGAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 771465
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||| || | |||||| || ||||| || | | || ||||| || |||
Sbjct 771466 AGGGTGCGCCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 771525
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| || || ||||| |||||| ||||| || || | || || ||
Sbjct 771526 ATGCCCTCCTTATCCTGGATCTTGCTCTTGACATTGTCGATAGTATCCGAAGACTCGACC 771585
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||||||||||| || ||||||||||| |||||||| ||||||||
Sbjct 771586 TCCAAGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 771632
Score = 141 bits (156), Expect = 2e-28
Identities = 168/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293
||| || || || || | |||||||| || |||||||| |||||||| || || || ||
Sbjct 770949 TCCGCCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGGATATTGTAGTCCGA 771008
Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353
|| || | || || || | ||| || || ||||| || || | || || ||||| ||
Sbjct 771009 AAGAGTGCGACCGTCCTCGAGCTGTTTACCCGCGAAGATAAGGCGCTGCTGATCGGGAGG 771068
Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
||||| ||||| ||||||||||| ||| ||| ||||||||||| | || || ||
Sbjct 771069 GATGCCCTCCTTATCTTGAATCTTGCTCTTTACGTTGTCGATGGTGTCAGACGACTCAAC 771128
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||| || || || || | |||||||||||| ||||||||
Sbjct 771129 CTCTAGAGTGATTGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 771176
Score = 138 bits (152), Expect = 2e-27
Identities = 169/228 (74%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | |||||||| || || || || || || ||||| || || |||
Sbjct 771178 CCACCACGGAGACGAAGAACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTCAGAG 771237
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || ||||| || | | || || || || |||
Sbjct 771238 AGAGTGCGACCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGCTGCTGATCTGGGGGA 771297
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413
|| || ||||||||||| || ||||| ||| ||| || ||||| |||| ||||| ||
Sbjct 771298 ATACCCTCCTTGTCTTGGAT-TTTGCTCTTTACGTTATCAATGGTATCTGACGATTCGAC 771356
Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| ||||| ||||| ||||||||||| || |||||
Sbjct 771357 CTCGAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 771404
Score = 127 bits (140), Expect = 4e-24
Identities = 151/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | ||| || || ||||| ||||| ||||| |||||||||
Sbjct 771634 CCACCACGGAGGCGGAGGACGAGGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 771693
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || ||||| | |||||| |||||||| || | | || ||||| || ||
Sbjct 771694 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGG 771753
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||| || || ||||| ||||||| ||||| ||||| | || || ||
Sbjct 771754 ATGCCCTCCTTATCCTGGATCTTGCTCTTGACGTTGTCGATAGTGTCCGAGGACTCAACC 771813
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | |||||||| || |||||||
Sbjct 771814 TCGAGCGTGATGGTCTTGCCCGTGA 771838
>seq18
Length=888533
Score = 116 bits (128), Expect = 7e-21
Identities = 314/472 (67%), Gaps = 14/472 (3%)
Strand=Plus/Plus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|||||| || ||||||||||| || || || |||||||||||||| |||||| |
Sbjct 234324 CATGACACCAGCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 234383
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|| || ||| |||||||||||| |||||||| ||| | ||||| || ||
Sbjct 234384 TAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCATTGTAGACCTTGGTGTTGCC 234443
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| || | | ||| || || |||||||| |||||||||| ||| ||| | |||
Sbjct 234444 GAGAGCCAACAGCAGGCGATCGGCAACGAACTCAATGTACTGGCACATAAGGGTGGCGTT 234503
Query 10115 CATGCCAATCA-TGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCG 10173
||| |||| | ||| |||||||| || |||| | ||| || | || | | ||| |
Sbjct 234504 CATACCAAGAAGTGC-GCAGGGGAGAGCCTCGCTCAAGAACTCTTGCTCAATTGTGACAG 234562
Query 10174 CTTCCTCGACGATGCTCTTTAC---CACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230
| || || |||| || || | | | || | ||||| ||| ||
Sbjct 234563 CCTCAGTGATGATGGCCTGGACAGACTCCTTGCTGGGGCGGTTGTT---GAGAAGAGAGA 234619
Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290
| || || | | || | || | |||||||||||| ||||| ||||||||| |
Sbjct 234620 AGAGCAGGCATGCGAAATCAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGA 234679
Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGG-CGCAGAACGACCCG 10349
| |||||| ||||| || || || || ||||| || |||| |||| || || |||
Sbjct 234680 ATGTCAGACCTGGCATCAGACCACGCTTCTTGAGCCAAAAGATGGACGCA-AAGGAGCCG 234738
Query 10350 GAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA 10399
|| |||||| ||||||||| | | |||||||| || | |||||
Sbjct 234739 CTGA--AGAAGATGCCCTCCACGGCAGCAAATGCGACGAGACGGTTGGCGAA 234788
Score = 84.2 bits (92), Expect = 4e-11
Identities = 183/269 (68%), Gaps = 4/269 (1%)
Strand=Plus/Plus
Query 10520 GAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CA 10578
|||||| || ||| |||| ||||| | |||| | |||| || ||||||| ||
Sbjct 234960 GAGCAGAGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCA 235019
Query 10579 TACGTGCCGAGGGG-TCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACC 10637
| |||||| |||| | || ||||| ||| |||| | | |||||||| | ||
Sbjct 235020 T-CGTGCCTCGGGGATTTGT-ACTTCGCCGGAAAAGCGCTCGACGAGGTTCTCGTTGACA 235077
Query 10638 ATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCG 10697
||||| ||| | | || |||||| |||||| ||| ||||||| |||||| || |||
Sbjct 235078 ATGCCGTCGGAGGCAGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCG 235137
Query 10698 TTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAG 10757
|||| | | |||||| | ||||| | || | | ||||| | ||||||
Sbjct 235138 TTCAATCGCTTGTTCCAGTCATGGAGATCCTTGGAAAGATCAATTTCCTCAGCAGTCCAG 235197
Query 10758 AAAGTGGCAACGGCCTTCTTGTACATCTG 10786
|| | || |||||||||||||||| ||
Sbjct 235198 AAGGAAGCCTCGGCCTTCTTGTACATTTG 235226
>seq29
Length=430389
Score = 84.2 bits (92), Expect = 4e-11
Identities = 76/96 (79%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 68370 TGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTT 68429
|||||||| | ||| || ||||||||||| | || || || || | |||||| ||
Sbjct 67420 TGAATCTTGGACTTCACATTGTCGATGGTGTCCGAAGACTCCACCTCGAGGGTGATAGTC 67361
Query 68430 TTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
|| |||||||||||||||||||| |||||||| |||
Sbjct 67360 TTACCCGTGAGGGTCTTGACGAAGATCTGCATGATG 67325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921621605100680
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