Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq17 228 2e-54 seq18 215 1e-50 >seq17 Length=926260 Score = 228 bits (252), Expect = 2e-54 Identities = 725/1109 (65%), Gaps = 30/1109 (3%) Strand=Plus/Plus Query 244340 CCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACA-GCTCTCGTCGAGGGC 244398 |||||||||||| |||| || ||| || ||| | | ||| | | || |||||| Sbjct 106210 CCCTCGTAGGTCTGGTATGGGCCGAGTTCCTTGGCGATGTCACAAGATGAAGT-GAGGGC 106268 Query 244399 GGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCT-TGCCGCAGGTGA 244457 ||||| ||||||||| ||||||||| |||| | | ||||| || || | || Sbjct 106269 GGCGTGGTAGATGGTTTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCTGGCG-ACTCGA 106327 Query 244458 AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTC 244517 |||| | || || || ||| | || || || || || || || ||||| || || | Sbjct 106328 AGGGCAAGCGCAGAGCCAGGAAAGCATCAGCAAGACCTTGGACACCCATGCCAATAGGCC 106387 Query 244518 TGTGTCGCTTGTTGGAGCG-CATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACC 244576 |||| || |||| ||| | || || | | || ||||| |||| | ||||| | | Sbjct 106388 TGTGGCGGAAGTTGCTGCGACGTGCCTCCTCG-ACTGGGTAGTGGTTGACCTCGATGATC 106446 Query 244577 TTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636 ||||| | ||||| |||| | || ||| ||| ||| || |||||| ||||| Sbjct 106447 TTGTTCAAATTGCGAGTGACAACCTGGGTGACCTCGTGAAGCTTTTGGAAGTCGAACTCG 106506 Query 244637 TAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTG 244696 | || | || ||| || | | | ||| || | | || || ||| Sbjct 106507 ----------CCACGCTTGTAATCAACAAAGGATGG--GAGAGCAAGGGAAGCAAGATTG 106554 Query 244697 CAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCAC 244756 ||||| |||||||| || | ||||||| || ||||| ||||||||||| || Sbjct 106555 CAGACAGCCACCTCGTCAGGAGCAGTGTACTCGATGATCTCAGTGCAGAGGTTGGAGCTT 106614 Query 244757 TTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||| || ||||||| || || ||| ||| ||||||||||||||||||||||||| Sbjct 106615 CGGATAGTACCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATG 106674 Query 244817 AAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTG 244876 || || || |||||| ||| || |||| | | | ||| || | | || | Sbjct 106675 AAAGGGTTACCAGTCTCGGTCTGCGCCTCGAGAATGGCATACCAAAGCTTCTGGGCACGG 106734 Query 244877 ACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGG 244936 || || ||| | ||| |||||||||| ||| || |||||||||| Sbjct 106735 ACGGTTTCACGACCACGATTCTCCTTCTCGTAGCGGTGGTAGAGCTCCTCGAACTCATCA 106794 Query 244937 CCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCG 244996 || | || ||| | || || || | || || | || |||| || || Sbjct 106795 CCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACAGCGTCCATTCACCATTC 106854 Query 244997 TCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTC 245056 || | ||| | || ||||||||| ||||||||||| | || | |||||| || | | Sbjct 106855 TCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGTAGAAGAGATCACGAGCG 106914 Query 245057 CTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGC 245116 | ||| ||| ||| |||||| | || || | ||| | ||||| ||| ||||| Sbjct 106915 CGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCGAAGACATCGGCGTGC 106974 Query 245117 CAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CAT 245175 || ||||| | |||| || | ||| ||||| ||||||||||| |||||||| || | Sbjct 106975 CATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCAACGTAA 107034 Query 245176 CCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGT 245235 | | | | |||| ||| || || |||| | | || || || |||||||| Sbjct 107035 CGTGCTGTG-TTGTTGTAGACACGGAGCATAGGAATGAGACCATTCGAAGTTCCGTTGGT 107093 Query 245236 GCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC----ATGCCTAGTCCGC 245291 ||| |||||||| ||| || | | || | | |||| || | ||| | |||| Sbjct 107094 GCCACCGATGTAGGAGCCTGTGGCAC---GGATAC-GATGCACGTTGAGGCCAATACCGC 107149 Query 245292 CGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGT 245351 | || ||||||||| | ||| ||| |||| | ||||| || || || ||||||| Sbjct 107150 CAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGATACCGTCAATGCTGT 107209 Query 245352 CCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTG-GGGCTTGGGGCTGCACGAGTTG 245410 || ||||||| | || ||||||||||||| ||| ||| ||| | ||| | |||| Sbjct 107210 CCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGATGGAG-TGCCTGCGTTG 107268 Query 245411 AACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 || || || || |||||| |||||||| Sbjct 107269 AAGAGCGTCGGCGAGGCGTGTGTAAAGTA 107297 >seq18 Length=888533 Score = 215 bits (238), Expect = 1e-50 Identities = 369/524 (70%), Gaps = 25/524 (5%) Strand=Plus/Minus Query 42633 CCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGA-CGCAAC 42691 |||||||| |||||||| || ||||| || |||||| | | || | | || Sbjct 234848 CCCTGCATTCGCAAGAAGGCTGATTGGGCCCTTCGATGGATCTCT-GACAAGAACTCTAC 234790 Query 42692 GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTT 42751 |||| | | | || || || ||| | ||||| ||||||||||||||| ||| |||| Sbjct 234789 TTTCGCCAACCGTCTCGTCGCATTTGCTGCCGTGGAGGGCATCTTCTTCAGCGGCTCCTT 234730 Query 42752 CGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 || |||||||| ||||||||| || ||| | |||||| || || || ||||| |||| Sbjct 234729 TGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCT-GATGCCAGGTCTGACATTCTCCAACG 234671 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCC 42870 | |||||| | | |||||||| |||||| || || || ||||| || ||||| | Sbjct 234670 AGCTCATCTCCCGCGACGAGGGTATGCATACTGATTTCGCATGCCTGCTCTTCTC---TC 234614 Query 42871 ACCTCAGGCACAA--GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGG 42927 |||| |||| |||| | |||||| |||| |||||||||||| ||||| || Sbjct 234613 TTCTCA---ACAACCGCCCCAGCAAGGAGTCTGTCCAGGCCATCATCACTGAGGCTGTCA 234557 Query 42928 AGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACG 42987 || ||| | |||||| | | || | || ||| | || | || |||||| | Sbjct 234556 CAATTGAGCAAGAGTTCTTGAGCGAGGCTCTCCCCTGCGCACTTCTTGGTATGAACGCCA 234497 Query 42988 ACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCA 43047 ||| |||||| ||||||| ||| ||| |||| ||| |||| | | ||| |||| Sbjct 234496 CCCTTATGTGCCAGTACATTGAGTTCGTTGCCG---ATCGCCTG---CTGTTGGCTCTCG 234443 Query 43048 GC--CGCC----TCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGG 43101 || | || ||||||| | | |||||||||||| ||||||||||||||| | | Sbjct 234442 GCAACACCAAGGTCTACAATGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTAG 234383 Query 43102 AGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||||||||||| ||||||||||| || | || |||||| Sbjct 234382 CTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACCAG 234339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338385507440