Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 136 9e-27 >seq6 Length=1708680 Score = 136 bits (150), Expect = 9e-27 Identities = 171/231 (74%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | ||| || | || | || ||| || || || || ||||| | | Sbjct 771178 CCACCACGGAGACGAAGAACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTCAGAG 771237 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| ||||| || | || |||||||||||||||| ||||| || ||||||| Sbjct 771238 AGAGTGCGACCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGCTGCTG---ATCTGGG 771294 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 || || || || || |||||||| ||| || ||||| || || | ||| |||||| Sbjct 771295 GGAATACCCTCCTTGTCTTGGATTTT-GCTCTTTACGTTATCAATGGTATCTGACGATTC 771353 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| ||||| ||||| || || |||||||||||||| || ||||| Sbjct 771354 GACCTCGAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 771404 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 ||||| || || || | ||| || | || | ||| || ||||||||||| ||||| Sbjct 770947 TGTCCGCCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGGATATTGTAGTCC 771006 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || ||||| ||||| || | ||||| || |||||||| || ||||| ||| Sbjct 771007 GAAAGAGTGCGACCGTCCTCGAGCTGTTTACCCGCGAAGATAAGGCGCTGCTGATCGGGA 771066 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||| || || ||||| || || || ||| || ||||| || || | || ||| || Sbjct 771067 GGGATGCCCTCCTTATCTTGAATCTT-GCTCTTTACGTTGTCGATGGTGTCAGACGACTC 771125 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| ||||||| ||||||||||| |||||||| Sbjct 771126 AACCTCTAGAGTGATTGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 771176 Score = 107 bits (118), Expect = 5e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || |||||||| | || ||| || ||||| || ||||| | Sbjct 771406 CCACCACGGAGGCGGAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 771465 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || || || | || || || |||||||||| ||||| || | || Sbjct 771466 AGGGTGCGCCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 771525 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || ||||||||||| || ||| || || || || |||| ||| || || || Sbjct 771526 ATGCCCTCCTTATCCTGGATCTT-GCTCTTGACATTGTCGATAGTATCCGAAGACTCGAC 771584 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||| ||||| || || || || |||||||| |||||||| Sbjct 771585 CTCCAAGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 771632 Score = 104 bits (114), Expect = 6e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || ||||| || | || || ||||| || || || |||| | Sbjct 771634 CCACCACGGAGGCGGAGGACGAGGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGAG 771693 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| |||||||| | || || || |||||||||| ||||| || | ||| Sbjct 771694 AGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGG 771753 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || || || ||||||||||| || ||| || ||||| || |||| || || || || Sbjct 771754 ATGCCCTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATAGTGTCCGAGGACTCAAC 771812 Query 288426 TTCGAGCGTGATCGTCTTCCCGGT 288449 ||||||||||| ||||| || || Sbjct 771813 CTCGAGCGTGATGGTCTTGCCCGT 771836 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 325107 GCTTCACATTATCTACGATGTCTTTAGGGTTGTAACTGGGAATGTTCGTCGACCATCCGG 325166 || ||| || ||||||||||| | |||||||| | ||||| | | ||| |||| Sbjct 489969 GCCTCAGGTTTTCTACGATGTCCATGGGGTTGTAGTTCGGAATTTCAGAGCTCCAACCGG 490028 Query 325167 TTCCGATACCACTCGATCCATTCACCAGGATACTCGGAATAACAGGCACATAATACTCTG 325226 |||| ||||||||||| ||||| || ||||| | ||||| ||||| ||||| ||| | Sbjct 490029 TTCCAATACCACTCGAGCCATTGACGAGGATTGTGGGAATGACAGGAACATACATCTCCG 490088 Query 325227 GTTCGATCTT 325236 | ||||| || Sbjct 490089 GCTCGATTTT 490098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653357111782