Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq17 289 3e-73 seq18 89.7 6e-13 seq6 82.4 9e-11 >seq17 Length=926260 Score = 289 bits (320), Expect = 3e-73 Identities = 1123/1740 (65%), Gaps = 35/1740 (2%) Strand=Plus/Plus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 |||||||||||||| ||||||||||| || ||||||| || | |||||||| | Sbjct 105664 CGGAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATCGACGTG 105723 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | |||| | || || | |||| || ||| | | || || |||||||||||| Sbjct 105724 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTGAGAGACTGAGACTGATCGATGAAG 105783 Query 113717 CGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTT---GATTTCCCACACAGTT 113773 ||||| || || ||||| | || | | ||| || ||||||||| ||||| Sbjct 105784 GCACCACGGTCAGCAGCCATCTGGATGA--TGGTTCG-CTGAGAGATTTCCCAAACAGTC 105840 Query 113774 CTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCC 113833 |||| || |||| | || || || || | || ||||||||||||||| | Sbjct 105841 TTGTAAAGAGTCTTGGTCTCTTCAGGAATGTTGGGAATGCGTTGGATGGAGCCACCTTC- 105899 Query 113834 TTGACCATGA---GATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCC 113890 || | |||| ||| |||||| | || ||||| ||||| || | ||||||| Sbjct 105900 -TG-CAATGATACGATTCTTCATGTTCTCAGACCACAGACCCATATCGACCAGATCCTTA 105957 Query 113891 ACGAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATAT 113948 | || ||| | |||| || |||||||| ||||| || | ||||| | Sbjct 105958 AGCAGCCATGGGT--TGACGACTTGGAACTCACCAGCGAGCACACGGCGGGAGTAGATGT 106015 Query 113949 TGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGG 114008 | | |||||||||||||||||||| ||||| || | ||| || | ||| || || || | Sbjct 106016 TCGATGTGTATGGCTCAAAGCACTCGTTGTTTCCGAGGATCTGAGAGGTAGATGCAGTTG 106075 Query 114009 GCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGG 114068 |||||||||| || | ||| ||| || | ||| | | ||| ||||| |||| Sbjct 106076 GCATGGGTGCAATCAAAAGAGAGTTGCGAACACCATGCTGAGCAATCTTCTCCTTCAGGG 106135 Query 114069 CGTCCCAGT--CGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACC 114126 | |||||| | || | || | | | | | |||||| || |||| || ||||| Sbjct 106136 AGGCCCAGTCCCACAGATCAG--TAGGAGTCACATTCCACATGTCGTACTGAAGAATACC 106193 Query 114127 TTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA 114186 || || ||||||| ||||| | |||| ||||||||| ||| || | || | Sbjct 106194 CTGAGACACTGGCGAACCCTCGTAGGTCTGGTATGGGCCGAGTTCCTTGGCGATGTCACA 106253 Query 114187 GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGC 114246 | |||||| ||||| || || || || || || | || | |||||| Sbjct 106254 AGATGAAGTGAGGGCGGCGTGGTAGATGGTTTCGAAGATCTGGATGTTGAGCTTCTTGGC 106313 Query 114247 CTCGTCGGAATCAAACGCGAGTCGGCACA-AAATAAATACATCCGCGAGACCTTGGACAC 114305 ||| || || || | | | ||| | | || |||| || ||||||||||||| Sbjct 106314 CTCTGGCGACTCGAAGGGCAAGC-GCAGAGCCAGGAAAGCATCAGCAAGACCTTGGACAC 106372 Query 114306 CGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAAT 114365 | | |||||| || | || | | || || || ||| || || || | Sbjct 106373 CCATGCCAATAGGCCTGTGGCGGAAGTTGCTGCGACGTGCCTCCTCGACTGGGTAGTGGT 106432 Query 114366 TCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTT 114425 | ||||| | | | || | ||| |||||||||| |||| || |||||||||| Sbjct 106433 TGACCTCGATGATCTTGTTCAAATTGCGAGTGACAACCTGGGTGACCTCGTGAAGCTTTT 106492 Query 114426 CGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGAT 114485 | | || || || | || | || ||| | || || || | || || |||| Sbjct 106493 GGAAGTCGAACTCGCCACGCTTGTAATCAACAAAGGATGGGAGAGCAAGGGAAGCAAGAT 106552 Query 114486 TACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAAC 114545 | || |||| ||| || | |||||||||| || || || || || | || || | Sbjct 106553 TGCAGACAGCCACCTCGTCAGGAGCAGTGTACTCGATGATCTCAGTGCAGAGGTTGGAGC 106612 Query 114546 TCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCA 114605 | || || |||| |||||| || || ||| |||| || || |||||||| |||| Sbjct 106613 TTCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCA 106672 Query 114606 TGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCGGCT 114664 || | || | || ||||| || || | || |||||| || | ||| | | || | ||| Sbjct 106673 TGAAAGGGTTACCAGTCTCGGTCTGCGCCTCGAGAATGGCATACCAAAGCTTCTG-GGCA 106731 Query 114665 GGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTA-CTTTGTGTAGAGGGCTTCAAACTC 114723 | || || | | || ||||| |||||| | || |||||| | || ||||| Sbjct 106732 CGGACGGTTTCACGACCACGATTCTCCTTCTCGTAGCGGTG-GTAGAGCTCCTCGAACTC 106790 Query 114724 TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACC 114783 ||||| | || | || || || |||| || || ||||| || | ||||| ||| Sbjct 106791 ATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACAGCGTCCATTCACC 106850 Query 114784 ACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCG 114843 | ||| | || |||||||||||||| || |||||||| | ||| |||||||||| || Sbjct 106851 ATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGTAGAAGAGATCACG 106910 Query 114844 ACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGC 114903 | ||| | ||||| | || || || ||||| || | ||| | | || ||| || Sbjct 106911 AGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCGAAGACATCGGC 106970 Query 114904 GTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTAC 114960 |||||| || || || || | || | | || ||| ||| |||||| || Sbjct 106971 GTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCTGGTCAAC 107030 Query 114961 ATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATT 115020 || | |||||| || | || || ||||| ||||||| ||||| || || || Sbjct 107031 GTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGACCATTCGAAGTTCCGTT 107090 Query 115021 TGT-CCCCCGA-ATACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCC 115078 || || |||| || ||| || |||| | || | ||| | || | |||||||| Sbjct 107091 GGTGCCACCGATGTAGGAGCCT--GTGGCACGGATACGATGCACGTTGAGGCCAATACCG 107148 Query 115079 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAG 115138 || || ||| ||||| || || | | || || ||||||| ||||| || | Sbjct 107149 CCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGATACCGTCAATGCTG 107208 Query 115139 TCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTG 115198 || | || | | || ||||||||| ||||| || || ||| || || |||||| Sbjct 107209 TCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGATGGAGTGCCTGCGTTG 107268 Query 115199 AAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCAA 115257 ||||| || || | ||||| | || ||| | || ||||| | ||||| ||||| | Sbjct 107269 AAGAGCGTCGGCGAGGCGTGTGT-AAAGTACTTCTGTGACATGTAGTCGTACGTCTCAAT 107327 Query 115258 GACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGG 115317 | | ||||| | |||||||| |||| | ||| ||||| | ||||| ||| || Sbjct 107328 GGCCTTCTCGATGTCATTGCCGTGAATGCCGACAGCGACACGCATCAGCATGTGTTGTGG 107387 >seq18 Length=888533 Score = 89.7 bits (98), Expect = 6e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 126064 ACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTT 126123 ||||||||| ||||||||||| || || ||||| ||| |||||||| ||||| ||||| Sbjct 234648 ACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGACCTGGCATCAGACCACGCTT 234707 Query 126124 CTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAA 126183 ||| | ||| || || | ||| || || ||||||||| |||||||| || || Sbjct 234708 CTTGAGCCAAAAGATGGACGCAAAGGAGCCGCTGAAGAAGATGCCCTCCACGGCAGCAAA 234767 Query 126184 CGCAAAGAGACG 126195 || | |||||| Sbjct 234768 TGCGACGAGACG 234779 >seq6 Length=1708680 Score = 82.4 bits (90), Expect = 9e-11 Identities = 244/369 (66%), Gaps = 17/369 (5%) Strand=Plus/Plus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 ||||| || || || || ||||| || ||| ||| || | ||| | |||| || || Sbjct 642607 CGATCGAAACGTCCGGGTCGGAGAAGAGCGGAGTCGAGCAAATCGGCGTGGTTAGTGGCG 642666 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || |||| | || ||| || | ||| || ||||| | ||| | | ||||| || Sbjct 642667 GCTATGAAGATGACGCCGGTGCTTTGATCGAAACCATCGAGGTCATTGAGAAGTTGGTTC 642726 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTT---ACCG 10963 | |||||| ||| | || ||| ||||| ||| | ||| | |||| ||| Sbjct 642727 AGGGTTTG---GCGGTGATAATT----GGCAT--CACGGG-ACTT--TCGCTTTCCACCT 642774 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCAAAG 11023 || ||||| | ||| || ||||| |||||| ||| || | || ||| | ||| Sbjct 642775 ACAGCGTCGAGTTCGTCAATGAATACGATAGCAGGTGCCTTGGCTCGTGCAGCGGTGAAG 642834 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAA 11083 | || ||||| | ||| || |||||||| || | | || | || | || | | || Sbjct 642835 AGTTCGCGGACACGCTTTGCTCCGACACCAACGTAGACCTCGTCGAACTCGGAGCCAGA- 642893 Query 11084 CAT-TGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 11142 ||| | || |||||| || || |||||| || | ||| ||||||||||| || || || Sbjct 642894 CATGTAGAAGAAGGGAACACCGGCTTCACCAGCAACGGCACGGGCGAGGAGCGTTTTTCC 642953 Query 11143 CGTCCCAGG 11151 || ||||| Sbjct 642954 AGTTCCAGG 642962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353084782520