Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq29 86.0 6e-12 >seq6 Length=1708680 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| |||| | |||||| | || | || || || ||||| || ||||| || | Sbjct 770950 CCGCCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGGATATTGTAGTCCGAA 771009 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| |||| || ||||| || || || | || || |||||||| |||||||| Sbjct 771010 AGAGTGCGACCGTCCTCGAGCTGTTTACCCGCGAAGATAAGGCGCTGCTGATCGGGAGGG 771069 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || |||||| || | || ||| | || || Sbjct 771070 ATGCCCTCCTTATCTTGAATCTTGCTCTTTACGTTGTCGATGGTGTCAGACGACTCAACC 771129 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||| ||| | |||||||||||||| || || ||||| || ||||| Sbjct 771130 TCTAGAGTGATTGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 771176 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | |||||||| || || |||||||| || | | ||||||| | || Sbjct 771421 AGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCC 771480 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||||||||| || | || | ||||||||||| |||||||| || || || || Sbjct 771481 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCC 771540 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | ||||| | || || || | || | |||| Sbjct 771541 TGGATCTTGCTCTTGACATTGTCGATAGTATCCGAAGACTCGACCTCCAAGGTGATGGTC 771600 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||||| ||||| || ||||| Sbjct 771601 TTACCCGTGAGGGTTTTGACGAAGATCTGCAT 771632 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||||||||||||||| | || |||||| ||||||| |||||||||||| Sbjct 771664 GTTGACTCCTTTTGAATGTTGTAATCGGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCG 771723 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || | || | ||||||||||| ||||| || || || || || || || || Sbjct 771724 GCGAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTT 771776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || ||||||||||| || | || ||||| |||| || |||||||| || Sbjct 771208 GTAGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGCTTTCCT 771267 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | |||||||| || || ||||| || || || ||||| ||||| |||| Sbjct 771268 GCGAAGATCAAGCGCTGCTGATCTGGGGGAATACCCTCCTTGTCTTGGATTTTGCTCTTT 771327 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | ||||| | || || || | || | |||||| || || | ||| Sbjct 771328 ACGTTATCAATGGTATCTGACGATTCGACCTCGAGGGTGATGGTCTTTCCTGTGAGAGTC 771387 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 771388 TTGACGAAGATTTGCAT 771404 >seq29 Length=430389 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | || ||| || |||| || |||||||||||| Sbjct 67578 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 67519 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | || || ||||||||||| || |||||||| || || ||| Sbjct 67518 GCGAAGATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTCT 67474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644369056360