Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq17 233 2e-56 >seq17 Length=926260 Score = 233 bits (258), Expect = 2e-56 Identities = 612/923 (66%), Gaps = 18/923 (2%) Strand=Plus/Minus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | | ||| | |||||| || || ||| || ||||||||| || | ||| Sbjct 107462 AACTACCAGTTCTTCGGCTTCAAGACCCTCGAGCGCTCATACCTCCTCCGCATCAACGGC 107403 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | |||| ||||||| || || || |||||||||| ||||| |||| ||||||||| | Sbjct 107402 AAGGTTGCCGAGCGTCCACAACACATGCTGATGCGTGTCGCTGTCGGCATTCACGGCAAT 107343 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||||| ||| | | | | | | ||||| | ||| | ||| ||| Sbjct 107342 GACATCGAGAAGGCCATTGAGACGTACGACTACATGTCACAGAAGTACTTTACACACGCC 107283 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 | ||||| || |||||||| || || || || |||||||| || || ||||| || Sbjct 107282 TCGCCGACGCTCTTCAACGCAGGCACTCCATCCCCTCAGATGTCCTCCTGCTTCCTCATT 107223 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | || | ||| ||| ||| || | ||||| || ||| |||||| || Sbjct 107222 GAC-ATGAAAGAGGACAGCATTGACGGTATCTACGACACACTGAAGACCTGTGCCTTGAT 107164 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCC 94071 ||| || || || || || || ||| || || |||| ||||||| || ||| Sbjct 107163 CTCCAAGACTGCTGGCGGTATTGGCCTCAACGTGCAT--CGTATCCGTGCCACAGGCTCC 107106 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 |||||| | || ||||| || || || || || ||| | ||||||||||| |||| |||| Sbjct 107105 TACATCGGTGGCACCAACGGAACTTCGAATGGTCTCATTCCTATGCTCCGTGTCTACAAC 107046 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || || ||||| ||||||||||| | | | ||| | || || ||||| Sbjct 107045 AACACAGCACGTTACGTTGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTAT 106986 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 || ||||| |||||||| || || | ||| | ||| |||| |||||||||||||| Sbjct 106985 CTTGAGCCATGGCACGCCGATGTCTTCGGCTTCCTTGACTTGCGCAAGAACCACGGCAAG 106926 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || || | || | || |||||||||||| | ||| | || || || || ||||| Sbjct 106925 GAAGAGGTCCGCGCTCGTGATCTCTTCTACGCTTTGTGGATCCCCGATCTCTTCATGAAG 106866 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 |||||| | | || | |||| || || ||||||||||| ||| || || || Sbjct 106865 CGCGTCCAAGAGAATGGTGAATGGACGCTGTTCTGTCCCAATGAGGCTCCTGGTCTTGCC 106806 Query 94372 GACGTTT--GTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAA-- 94427 || |||| | ||| | | || || || | || || ||||| | ||| || Sbjct 106805 GATGTTTACGGTGAT-GAG-TTCGAGGAGCTCTACCACCGCTACGA---GAAGGAGAATC 106751 Query 94428 --GGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 || | ||| | ||| |||||| ||| || || | || | ||| Sbjct 106750 GTGGTCGTGAA-ACCGTCCGTGCCCAGAAGCTTTGGTATGCCATTCTCGAGGCGCAGACC 106692 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 ||||| |||| || | ||| | | ||||||| | |||| ||| ||||||| || Sbjct 106691 GAGACTGGTAACCCTTTCATGCTCTACAAGGACGCCTGCAACAGGAAGAGCAACCAGAAG 106632 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 |||| || ||| ||||| || || ||||| ||||| ||||||| ||| |||| Sbjct 106631 AACCTGGGTACTATCCGAAGCTCCAACCTCTGCACTGAGATCATCGAGTACACTGCTCCT 106572 Query 94606 GACGAGATTGCTGTGTGTAACCT 94628 |||||| | ||||| || || || Sbjct 106571 GACGAGGTGGCTGTCTGCAATCT 106549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722773301240