Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq17 168 7e-37
seq18 105 7e-18
seq6 93.3 4e-14
>seq17
Length=926260
Score = 168 bits (186), Expect = 7e-37
Identities = 565/871 (65%), Gaps = 19/871 (2%)
Strand=Plus/Plus
Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656
|||| || || ||||| ||||| ||| ||| || | | |||||| | ||||||
Sbjct 106537 GCAAGGGAAGCAAGATTGCAGACAGCCACCTCGTCAGGAGCAGTGTACTCGATGATCTCA 106596
Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716
| |||||||||| || | || |||| || | ||| ||||| || | |||||
Sbjct 106597 GTGCAGAGGTTGGAGCTTCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAG 106656
Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAAC 153773
||||| ||| |||||||| | || || |||||| |||| |||| || | ||
Sbjct 106657 GCGTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGCGCCTCGAGAATGGCATAC 106716
Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833
| | || | ||| || || || | ||| || ||| ||||||| || | |
Sbjct 106717 CAAAGC---TTCTGGGCACGGACGGTTTCACGACCACGATTCTCCTTCTCGTAGCGGTGG 106773
Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893
|| || ||| ||||| || ||||| ||||| || || ||| || || |||||
Sbjct 106774 TAGAGCTCCTCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAG 106833
Query 153894 ATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953
| ||||| ||| | | | | | |||||| |||||| ||||| || | ||| |
Sbjct 106834 AACAGCGTCCATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAA 106893
Query 153954 GCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTT---GCGTTTCAGATTG 154010
||||| | ||| || || || | || ||| ||| ||| ||| || |
Sbjct 106894 GCGTAGAAGAGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCG---CAAGTCA 106950
Query 154011 AGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC 154070
|| | || ||| ||||||||||| || |||| |||| ||| | |||||| ||||
Sbjct 106951 AGGAAGCCGAAGACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGC 107010
Query 154071 TTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCC 154127
|| || ||||| || |||| || | | |||||| |||| || | ||| ||
Sbjct 107011 TTGTTGCCACCCTGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATG 107070
Query 154128 AGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGC 154187
|| || | | || |||||||| | ||| | | ||| ||| || | |||||
Sbjct 107071 AGACCATTCGAAGTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGC 107130
Query 154188 ACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCT 154246
||||| | |||||| ||||| || || ||| || || || ||| ||| ||
Sbjct 107131 ACGTTGAGGCCAATACCGCCAGCAGT-CTTGGAGATCAAGGCACAGGTCTTCAGTGTGTC 107189
Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306
|||||| ||||| ||||| || || | | | | | ||| || || |||| || ||
Sbjct 107190 GTAGATACCGTCAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGG 107249
Query 154307 A-ATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365
||| | || || || ||||| || || ||||| ||||| || || ||
Sbjct 107250 GGATG-GAGTGCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACA 107308
Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425
| | |||||| || ||||| | ||||| |||| |||||||||||||| ||||| |
Sbjct 107309 TGTAGTCGTACGTCTCAATGGCCTTCTCGATGTCATTGCCGTGAATGCCGACAGCGACAC 107368
Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456
|||| |||||||| || ||||| ||||| ||
Sbjct 107369 GCATCAGCATGTGTTGTGGACGCTCGGCAAC 107399
>seq18
Length=888533
Score = 105 bits (116), Expect = 7e-18
Identities = 339/522 (65%), Gaps = 23/522 (4%)
Strand=Plus/Minus
Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385
|| || ||| ||||||| |||||| | ||||| | |||||| | | | | |
Sbjct 234851 GTTCCCTGCATTCGCAAGAAGGCTGATTGGGCCCTTCGATGGATCTCTGACAAGAACTCT 234792
Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445
|| | ||| | || | || || || || || |||||| | || || |||| |
Sbjct 234791 ACTTTCGCCAACCGTCTCGTCGCATTTGCTGCCGTGGAGGGCATCTTCTTCAGCGGCTCC 234732
Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505
||||| ||||||||| | || | | || | ||||| || ||||| ||| ||||
Sbjct 234731 TTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTGACATTCTCCAAC 234672
Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACTA---- 52558
||| | || || |||||||| || |||| || || || || ||||| || ||
Sbjct 234671 GAGCTCATCTCCCGCGACGAGGGTATGCATACTGATTTCGCATGCCTGCTCTTCTCTCTT 234612
Query 52559 --CAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAG 52616
||| | ||| || | || ||| || | ||| | ||| ||| |||
Sbjct 234611 CTCAACAACCGC----CCCAGCAA--GGAGTCTG------TCCAGGCCATCATCACTGAG 234564
Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676
|| || | || || | ||||| || | | || || || || || || || |||
Sbjct 234563 GCTGTCACAATTGAGCAAGAGTTCTTGAGCGAGGCTCTCCCCTGCGCACTTCTTGGTATG 234504
Query 52677 AACGCGCAGTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735
||||| || | |||||| ||||||| ||||| || || ||||| ||| || || ||
Sbjct 234503 AACGC-CACCCTTATGTGCCAGTACATTGAGTTCGTTGCCGATCGCCTGCTGTTGGCTCT 234445
Query 52736 CGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795
||| | | ||| || ||| || ||| || || || || ||| | ||||| |||||
Sbjct 234444 CGGCAACACCAAGGTCTACAATGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCT 234385
Query 52796 TGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
| |||||||||||||| ||||||||||| || || || ||
Sbjct 234384 AGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 234343
>seq6
Length=1708680
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| |||| ||| | || || || | | ||||||||||| || ||||||||
Sbjct 770950 CCGCCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGGATATTGTAGTCCGAA 771009
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||||||| |||||||| | |||| || ||||| || || |||||
Sbjct 771010 AGAGTGCGACCGTCCTCGAGCTGTTTACCCGCGAAGATAAGGCGCTGCTGATCGGGAGGG 771069
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || || || ||| | || | |||| | || | |||||| | |||||| ||
Sbjct 771070 ATGCCCTCCTTATC-TTGAATCTTGCTCTTTACGTTGTCGATGGTGTCAGACGACTCAAC 771128
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || |||| || || || || ||||||||
Sbjct 771129 CTCTAGAGTGATTGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 771176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261971973680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |