Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq17 168 7e-37 seq18 105 7e-18 seq6 93.3 4e-14 >seq17 Length=926260 Score = 168 bits (186), Expect = 7e-37 Identities = 565/871 (65%), Gaps = 19/871 (2%) Strand=Plus/Plus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 |||| || || ||||| ||||| ||| ||| || | | |||||| | |||||| Sbjct 106537 GCAAGGGAAGCAAGATTGCAGACAGCCACCTCGTCAGGAGCAGTGTACTCGATGATCTCA 106596 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | |||||||||| || | || |||| || | ||| ||||| || | ||||| Sbjct 106597 GTGCAGAGGTTGGAGCTTCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAG 106656 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAAC 153773 ||||| ||| |||||||| | || || |||||| |||| |||| || | || Sbjct 106657 GCGTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGCGCCTCGAGAATGGCATAC 106716 Query 153774 CTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCG 153833 | | || | ||| || || || | ||| || ||| ||||||| || | | Sbjct 106717 CAAAGC---TTCTGGGCACGGACGGTTTCACGACCACGATTCTCCTTCTCGTAGCGGTGG 106773 Query 153834 TACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACAC 153893 || || ||| ||||| || ||||| ||||| || || ||| || || ||||| Sbjct 106774 TAGAGCTCCTCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAG 106833 Query 153894 ATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGC 153953 | ||||| ||| | | | | | |||||| |||||| ||||| || | ||| | Sbjct 106834 AACAGCGTCCATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAA 106893 Query 153954 GCGTACATGAGGTCGCGCGCCTTGCAATCCTCCGCGCCCATGTT---GCGTTTCAGATTG 154010 ||||| | ||| || || || | || ||| ||| ||| ||| || | Sbjct 106894 GCGTAGAAGAGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCG---CAAGTCA 106950 Query 154011 AGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC 154070 || | || ||| ||||||||||| || |||| |||| ||| | |||||| |||| Sbjct 106951 AGGAAGCCGAAGACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGC 107010 Query 154071 TTT---CCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCC 154127 || || ||||| || |||| || | | |||||| |||| || | ||| || Sbjct 107011 TTGTTGCCACCCTGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATG 107070 Query 154128 AGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGC 154187 || || | | || |||||||| | ||| | | ||| ||| || | ||||| Sbjct 107071 AGACCATTCGAAGTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGC 107130 Query 154188 ACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCT 154246 ||||| | |||||| ||||| || || ||| || || || ||| ||| || Sbjct 107131 ACGTTGAGGCCAATACCGCCAGCAGT-CTTGGAGATCAAGGCACAGGTCTTCAGTGTGTC 107189 Query 154247 GTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG 154306 |||||| ||||| ||||| || || | | | | | ||| || || |||| || || Sbjct 107190 GTAGATACCGTCAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGG 107249 Query 154307 A-ATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCA 154365 ||| | || || || ||||| || || ||||| ||||| || || || Sbjct 107250 GGATG-GAGTGCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACA 107308 Query 154366 TCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGC 154425 | | |||||| || ||||| | ||||| |||| |||||||||||||| ||||| | Sbjct 107309 TGTAGTCGTACGTCTCAATGGCCTTCTCGATGTCATTGCCGTGAATGCCGACAGCGACAC 107368 Query 154426 GCATGAGCATGTGCTGCGGACGTTCGGCGAC 154456 |||| |||||||| || ||||| ||||| || Sbjct 107369 GCATCAGCATGTGTTGTGGACGCTCGGCAAC 107399 >seq18 Length=888533 Score = 105 bits (116), Expect = 7e-18 Identities = 339/522 (65%), Gaps = 23/522 (4%) Strand=Plus/Minus Query 52326 GTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCC 52385 || || ||| ||||||| |||||| | ||||| | |||||| | | | | | Sbjct 234851 GTTCCCTGCATTCGCAAGAAGGCTGATTGGGCCCTTCGATGGATCTCTGACAAGAACTCT 234792 Query 52386 ACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGC 52445 || | ||| | || | || || || || || |||||| | || || |||| | Sbjct 234791 ACTTTCGCCAACCGTCTCGTCGCATTTGCTGCCGTGGAGGGCATCTTCTTCAGCGGCTCC 234732 Query 52446 TTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAAC 52505 ||||| ||||||||| | || | | || | ||||| || ||||| ||| |||| Sbjct 234731 TTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTGACATTCTCCAAC 234672 Query 52506 GAGTTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---CTACTA---- 52558 ||| | || || |||||||| || |||| || || || || ||||| || || Sbjct 234671 GAGCTCATCTCCCGCGACGAGGGTATGCATACTGATTTCGCATGCCTGCTCTTCTCTCTT 234612 Query 52559 --CAAGACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAG 52616 ||| | ||| || | || ||| || | ||| | ||| ||| ||| Sbjct 234611 CTCAACAACCGC----CCCAGCAA--GGAGTCTG------TCCAGGCCATCATCACTGAG 234564 Query 52617 GCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATG 52676 || || | || || | ||||| || | | || || || || || || || ||| Sbjct 234563 GCTGTCACAATTGAGCAAGAGTTCTTGAGCGAGGCTCTCCCCTGCGCACTTCTTGGTATG 234504 Query 52677 AACGCGCAGTCC-ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCT 52735 ||||| || | |||||| ||||||| ||||| || || ||||| ||| || || || Sbjct 234503 AACGC-CACCCTTATGTGCCAGTACATTGAGTTCGTTGCCGATCGCCTGCTGTTGGCTCT 234445 Query 52736 CGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCT 52795 ||| | | ||| || ||| || ||| || || || || ||| | ||||| ||||| Sbjct 234444 CGGCAACACCAAGGTCTACAATGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCT 234385 Query 52796 TGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | |||||||||||||| ||||||||||| || || || || Sbjct 234384 AGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 234343 >seq6 Length=1708680 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||| | || || || | | ||||||||||| || |||||||| Sbjct 770950 CCGCCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGGATATTGTAGTCCGAA 771009 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| |||||||| | |||| || ||||| || || ||||| Sbjct 771010 AGAGTGCGACCGTCCTCGAGCTGTTTACCCGCGAAGATAAGGCGCTGCTGATCGGGAGGG 771069 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || || || ||| | || | |||| | || | |||||| | |||||| || Sbjct 771070 ATGCCCTCCTTATC-TTGAATCTTGCTCTTTACGTTGTCGATGGTGTCAGACGACTCAAC 771128 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || || |||| || || || || |||||||| Sbjct 771129 CTCTAGAGTGATTGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 771176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261971973680