Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq6 109 5e-19
seq18 82.4 7e-11
>seq6
Length=1708680
Score = 109 bits (120), Expect = 5e-19
Identities = 167/234 (71%), Gaps = 3/234 (1%)
Strand=Plus/Plus
Query 126881 ACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAA 126940
|||| ||| || || | || | |||||| || | || ||||| ||||| ||||||||
Sbjct 770945 ACTG-TCCGCCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGGATATTGTAG 771003
Query 126941 TCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCG 127000
|| | |||||| || || |||||||| || ||| |||| | ||||||||||||
Sbjct 771004 TCCGAAAGAGTGCGACCGTCCTCGAGCTGTTTACCCGCGAAGATAAGGCGCTGCTGATCG 771063
Query 127001 GGAGGTATGCCCTCCTTGTCCGTGAT-TTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059
||||| ||||||||||| || || || || || |||| |||| |||||| |
Sbjct 771064 GGAGGGATGCCCTCCTTATCTTGAATCTTGCTCTTTACGTTG-TCGATGGTGTCAGACGA 771122
Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| || || | || | || |||||||||| || || || || ||||||||
Sbjct 771123 CTCAACCTCTAGAGTGATTGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 771176
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| || || || || || ||||| || || ||||| ||| || ||||| || |||
Sbjct 771436 GTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCCTCAAGCTGCTTGCCA 771495
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || ||||| ||||||||||| ||| ||| || ||||
Sbjct 771496 GCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGGATCTTGCTCTTG 771555
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096
| | |||| || |||| | |||||| || | ||| | || || || || || |||
Sbjct 771556 ACATTGTCGATAGTATCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTGAGGGTT 771615
Query 127097 TTTACAAAAATCTGCAT 127113
|| || || ||||||||
Sbjct 771616 TTGACGAAGATCTGCAT 771632
Score = 100 bits (110), Expect = 3e-16
Identities = 128/174 (74%), Gaps = 2/174 (1%)
Strand=Plus/Plus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| |||||||| ||||||||| | ||||| || || ||||| || ||
Sbjct 771664 GTTGACTCCTTTTGAATGTTGTAATCGGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCG 771723
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| |||||||| || ||||| ||||||||||| ||| ||| || ||||
Sbjct 771724 GCGAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGCTCTTG 771783
Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| |||| |||| ||||||| ||| || |||| || | || ||||| ||
Sbjct 771784 ACGTTG-TCGATAGTGTCCGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGT 771836
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | || | ||||| || | ||||| || || ||||| ||||| ||
Sbjct 771178 CCACCACGGAGACGAAGAACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTCAGAG 771237
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| |||||| || || ||||| ||||| ||| ||||||| ||||||||||| || ||
Sbjct 771238 AGAGTGCGACCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGCTGCTGATCTGGGGGA 771297
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066
|| ||||||||||| |||||| ||| | | || | ||| || | |||||
Sbjct 771298 ATACCCTCCTTGTCTTGGATTTTGCTCTTTACGTTATCAATGGTATCTGACGATTCGACC 771357
Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || || || || ||||| || || || || |||||
Sbjct 771358 TCGAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 771404
>seq18
Length=888533
Score = 82.4 bits (90), Expect = 7e-11
Identities = 156/226 (69%), Gaps = 4/226 (2%)
Strand=Plus/Minus
Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414
|| || ||| | |||||| ||||| || ||||||||| ||| | | | ||
Sbjct 234566 GAGGCTGTCACAATTGAGCAAGAGTTCTTGAGCGAGGCTCTCCCCTGCGCACTTCTTGGT 234507
Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474
|||||||| | ||| | ||||||| || || || ||||| |||||||| ||| |
Sbjct 234506 ATGAACGCCACCCTTATGTGCCAGTACATTGAGTTCGTTGCCGATCGCCTGCT-GTTG-G 234449
Query 47475 CTAAAGT--ATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532
|| | | ||||| | ||| | || || || ||||| || ||| | ||||| |
Sbjct 234448 CTCTCGGCAACACCAAGGTCTACAATGCCACCAACCCCTTCGACTTCATGGAGAACATCT 234389
Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||| | |||||||||||||| ||||||||||| || || || ||
Sbjct 234388 CGCTAGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 234343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500389880560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |