Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 seq18 82.4 7e-11 >seq6 Length=1708680 Score = 109 bits (120), Expect = 5e-19 Identities = 167/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 126881 ACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAA 126940 |||| ||| || || | || | |||||| || | || ||||| ||||| |||||||| Sbjct 770945 ACTG-TCCGCCACGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGGATATTGTAG 771003 Query 126941 TCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCG 127000 || | |||||| || || |||||||| || ||| |||| | |||||||||||| Sbjct 771004 TCCGAAAGAGTGCGACCGTCCTCGAGCTGTTTACCCGCGAAGATAAGGCGCTGCTGATCG 771063 Query 127001 GGAGGTATGCCCTCCTTGTCCGTGAT-TTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059 ||||| ||||||||||| || || || || || |||| |||| |||||| | Sbjct 771064 GGAGGGATGCCCTCCTTATCTTGAATCTTGCTCTTTACGTTG-TCGATGGTGTCAGACGA 771122 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || || | || | || |||||||||| || || || || |||||||| Sbjct 771123 CTCAACCTCTAGAGTGATTGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCAT 771176 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| || || ||||| ||| || ||||| || ||| Sbjct 771436 GTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCCTCAAGCTGCTTGCCA 771495 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || ||||| ||||||||||| ||| ||| || |||| Sbjct 771496 GCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCCTGGATCTTGCTCTTG 771555 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| || |||| | |||||| || | ||| | || || || || || ||| Sbjct 771556 ACATTGTCGATAGTATCCGAAGACTCGACCTCCAAGGTGATGGTCTTACCCGTGAGGGTT 771615 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 771616 TTGACGAAGATCTGCAT 771632 Score = 100 bits (110), Expect = 3e-16 Identities = 128/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| |||||||| ||||||||| | ||||| || || ||||| || || Sbjct 771664 GTTGACTCCTTTTGAATGTTGTAATCGGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCG 771723 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| |||||||| || ||||| ||||||||||| ||| ||| || |||| Sbjct 771724 GCGAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGCTCTTG 771783 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | |||| |||| ||||||| ||| || |||| || | || ||||| || Sbjct 771784 ACGTTG-TCGATAGTGTCCGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGT 771836 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | ||||| || || ||||| ||||| || Sbjct 771178 CCACCACGGAGACGAAGAACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTCAGAG 771237 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| ||||| ||| ||||||| ||||||||||| || || Sbjct 771238 AGAGTGCGACCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGCTGCTGATCTGGGGGA 771297 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || ||||||||||| |||||| ||| | | || | ||| || | ||||| Sbjct 771298 ATACCCTCCTTGTCTTGGATTTTGCTCTTTACGTTATCAATGGTATCTGACGATTCGACC 771357 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || || || ||||| || || || || ||||| Sbjct 771358 TCGAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 771404 >seq18 Length=888533 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 47355 GAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGA 47414 || || ||| | |||||| ||||| || ||||||||| ||| | | | || Sbjct 234566 GAGGCTGTCACAATTGAGCAAGAGTTCTTGAGCGAGGCTCTCCCCTGCGCACTTCTTGGT 234507 Query 47415 ATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAG 47474 |||||||| | ||| | ||||||| || || || ||||| |||||||| ||| | Sbjct 234506 ATGAACGCCACCCTTATGTGCCAGTACATTGAGTTCGTTGCCGATCGCCTGCT-GTTG-G 234449 Query 47475 CTAAAGT--ATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || | | ||||| | ||| | || || || ||||| || ||| | ||||| | Sbjct 234448 CTCTCGGCAACACCAAGGTCTACAATGCCACCAACCCCTTCGACTTCATGGAGAACATCT 234389 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| | |||||||||||||| ||||||||||| || || || || Sbjct 234388 CGCTAGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTA 234343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500389880560