Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6 129 1e-24 seq16 100 7e-16 seq29 96.9 8e-15 seq17 96.9 8e-15 >seq6 Length=1708680 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || ||||| ||||| ||||| |||| ||||||||| | || || | ||||| Sbjct 771421 AGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGACAGGGTGCGCCCATCC 771480 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| | ||||||||||| ||| ||| || || ||| Sbjct 771481 TCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATGCCCTCCTTATCC 771540 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| || || | | || || ||||| ||||| ||| Sbjct 771541 TGGATCTTGCTCTTGACATTGTCGATAGTATCCGAAGACTCGACCTCCAAGGTGATGGTC 771600 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| ||||| || || || || Sbjct 771601 TTACCCGTGAGGGTTTTGACGAAGATCTG 771629 Score = 113 bits (124), Expect = 1e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||| || ||||||||||| | |||||| || | | || | || ||| Sbjct 771649 AGGACGAGGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGAGAGGGTGCGGCCGTCT 771708 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| | ||||||||||| ||| || || || ||| Sbjct 771709 TCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCC 771768 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | || || || | |||||| ||| Sbjct 771769 TGGATCTTGCTCTTGACGTTGTCGATAGTGTCCGAGGACTCAACCTCGAGCGTGATGGTC 771828 Query 199598 TTACCCGTGA 199607 || ||||||| Sbjct 771829 TTGCCCGTGA 771838 Score = 102 bits (112), Expect = 2e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || || ||||| || | ||||||||||| | ||| | || || Sbjct 771193 AGAACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTCAGAGAGAGTGCGACCGTCC 771252 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| |||||||| | |||||||| || || ||| || || || Sbjct 771253 TCGAGCTGCTTTCCTGCGAAGATCAAGCGCTGCTGATCTGGGGGAATACCCTCCTTGTCT 771312 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| ||| || | ||| |||| | ||| || || | ||||| ||| Sbjct 771313 TGGATTTTGCTCTTTACGTTATCAATGGTATCTGACGATTCGACCTCGAGGGTGATGGTC 771372 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || || ||||| Sbjct 771373 TTTCCTGTGAGAGTCTTGACGAAGATTTG 771401 Score = 93.3 bits (102), Expect = 1e-13 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| ||||||||||||| |||||||| | | ||| | || || Sbjct 770965 AGCACCAAGTGCAGAGTGGACTCCTTTTGGATATTGTAGTCCGAAAGAGTGCGACCGTCC 771024 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || || |||||||| || |||||||| || ||| || || || || Sbjct 771025 TCGAGCTGTTTACCCGCGAAGATAAGGCGCTGCTGATCGGGAGGGATGCCCTCCTTATCT 771084 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| |||||| | | || || || | ||||| ||| Sbjct 771085 TGAATCTTGCTCTTTACGTTGTCGATGGTGTCAGACGACTCAACCTCTAGAGTGATTGTC 771144 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || || || || || || Sbjct 771145 TTGCCGGTCAAGGTCTTGACGAAGATCTG 771173 >seq16 Length=934283 Score = 100 bits (110), Expect = 7e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||||| |||| ||||||||| | | ||| | || || Sbjct 373758 AGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGGCCGTCC 373817 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| ||||||||||| || |||||||||||||| ||| || || ||| Sbjct 373818 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTATCC 373877 Query 199538 TGAATCTT 199545 || ||||| Sbjct 373878 TGGATCTT 373885 >seq29 Length=430389 Score = 96.9 bits (106), Expect = 8e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| ||||||||||| |||| ||||||||| | | || | || || Sbjct 67593 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 67534 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 || |||||||| ||||||||||| || ||||||||||| || |||||| || Sbjct 67533 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGGAATTCCCTC 67481 >seq17 Length=926260 Score = 96.9 bits (106), Expect = 8e-15 Identities = 174/251 (69%), Gaps = 10/251 (4%) Strand=Plus/Plus Query 167767 GGCGTCCTTGTAGACGATGAAGGGCATACCAACCTCCGCTTGAGCCACCAAAATGTGGTG 167826 |||||||||||||| ||||| || ||||| ||| | || ||| | | |||| | Sbjct 106656 GGCGTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGCGCCTCGAGAATGGCATA 106715 Query 167827 CCAAAGTTCTTGGGCTTTTACGGTAGTTCTCGCTCTTCCTTCT--TTTTCGTATCTCTCA 167884 |||||| | ||||| ||||| ||| || | |||| || ||||| | | Sbjct 106716 CCAAAGCTTCTGGGCACGGACGGT--TTCACGACCACGATTCTCCTTCTCGTAGCGGTGG 106773 Query 167885 TAGAGGTCTTCGAAATCCTTCCCGTAAATTTCGTCAAGACCGGGAGCTTCCTTCGGACAA 167944 ||||| || ||||| || | ||||||| ||| ||||||| ||||| || || ||||| Sbjct 106774 TAGAGCTCCTCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAG 106833 Query 167945 AAGAGACTCCAATTTCCATCGGTCTC---GACCCTCTTCATGAAGAGGTCGGAAGTCCAA 168001 || || |||| | |||| |||| ||| | |||||||||||| |||| |||| Sbjct 106834 AACAGCGTCCATTCACCAT---TCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCAC 106890 Query 168002 ATCGCGTAGAA 168012 | |||||||| Sbjct 106891 AAAGCGTAGAA 106901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920557759623