Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq18 163 3e-35
seq6 127 2e-24
seq29 107 2e-18
seq16 104 2e-17
>seq18
Length=888533
Score = 163 bits (180), Expect = 3e-35
Identities = 202/276 (73%), Gaps = 3/276 (1%)
Strand=Plus/Plus
Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226
||| ||||||||||| ||||| | || ||||| | ||||||||| ||| || ||
Sbjct 234948 GTATGTGTCGATGAGCAGAGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAA 235007
Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286
||||| ||||| || |||||| | || ||||| | || |||||||| || ||
Sbjct 235008 ACCGTAGAAGCATCGTGCCTCGGGGATTTGTACTTCGCCGGAAAAGCGCTCGACGAGGTT 235067
Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346
|||||||| ||||||||| ||| ||||| ||||| || ||||| |||||| |||
Sbjct 235068 CTCGTTGACAATGCCGTCGGAGGCAGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCG 235127
Query 133347 CTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403
||||| ||||||||| ||| | |||||| | |||||||| || || | |||||
Sbjct 235128 CTCGTCGTCGTTCAATCGCTTGTTCCAGTCATGGAGATCCTTGGAAAGATCAATTTCCTC 235187
Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| || || |||||||| || ||||||||
Sbjct 235188 AGCAGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 235223
Score = 116 bits (128), Expect = 4e-21
Identities = 316/480 (66%), Gaps = 8/480 (2%)
Strand=Plus/Plus
Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684
||||| || || || || || || | | || ||| | ||| || || |||||||||
Sbjct 234358 TTCTCGAAGAAGTTGGTCTTGCCAGCTAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTG 234417
Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744
| | |||||| ||||||| | || | | ||||| | ||||| ||||||||
Sbjct 234418 GTGGCATTGTAGACCTTGGTGTTGCCGAGAGCCAACAGCAGGCGATCGGCAACGAACTCA 234477
Query 132745 ATGTATTGCGACAT---GGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800
||||| || |||| ||| || || | || || || |||| || || || ||
Sbjct 234478 ATGTACTGGCACATAAGGGTGGCG---TTCATACCAAGAAGTGCGCAGGGG-AGAGCCTC 234533
Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860
| | | || |||||| || | ||| || || |||| ||| || || | ||
Sbjct 234534 GCTCAAGAACTCTTGCTCAATTGTGACAGCCTCAGTGATGATGGCCTGGACAGACTCCTT 234593
Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920
||| || || | | | | ||| | || ||| || || || ||||| |||||
Sbjct 234594 GCTGGGGCGGTTGTTGAGAAGAGAGAAGAGCAGGCATGCGAAATCAGTATGCATACCCTC 234653
Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980
||| | ||| ||||| |||||| ||| |||| || ||||| || || || || |||||
Sbjct 234654 GTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGACCTGGCATCAGACCACGCTTCTTGAG 234713
Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040
|||||| |||| || || ||| ||||||| |||||| ||||| || || || ||
Sbjct 234714 CCAAAAGATGGACGCAAAGGAGCCGCTGAAGAAGATGCCCTCCACGGCAGCAAATGCGAC 234773
Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100
|| || | | |||| || | | ||| | |||||| || || ||||| || |||||
Sbjct 234774 GAGACGGTTGGCGAAAGTAGAGTTCTTGTCAGAGATCCATCGAAGGGCCCAATCAGCCTT 234833
>seq6
Length=1708680
Score = 127 bits (140), Expect = 2e-24
Identities = 161/218 (74%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||| || || ||||||||| |||| ||||| | |
Sbjct 771404 ATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTCGAATCGTCA 771345
Query 38304 GACAGCGTGCA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | | |||| |||||| ||||||| ||||| ||||| |||||| | || |
Sbjct 771344 GATACCATTGATAACG--TAAAGAGCAAAATCCAAGACAAGGAGGGTATTCCCCCAGATC 771287
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| | || | ||| || || ||||| || |||| ||||| ||| |||||||
Sbjct 771286 AGCAGCGCTTGATCTTCGCAGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACA 771227
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||| || |||||| | || || || ||||| || |||
Sbjct 771226 ACATTCAGAAGGAATCTACACTCCACTTGGTTCTTCGT 771189
Score = 116 bits (128), Expect = 4e-21
Identities = 158/217 (73%), Gaps = 4/217 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| ||||| |||||||| || ||||||||| | || |||||| | |
Sbjct 771632 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 771573
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|| | | | || | | |||| || |||| || || ||||| ||||| | ||||
Sbjct 771572 GATACTATCGACAATG--TCAAGAGCAAGATCCAGGATAAGGAGGGCATTCCTCCTGACC 771515
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| | || | ||| ||||| ||||| || || | ||||||||| |||||||
Sbjct 771514 AGCAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGCACCCTGTCGGACTACA 771455
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458
||||||| |||||| |||| || ||| | || || ||
Sbjct 771454 ACATCCAGAAGGAATCGACCCTCCATCTCGTCCTCCG 771418
Score = 114 bits (126), Expect = 1e-20
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || | || ||||| || ||||| | || || ||| | |
Sbjct 771176 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACAATCACTCTAGAGGTTGAGTCGTCT 771117
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | |||| |||||| || || | || || ||||| || || |||| |
Sbjct 771116 GACACCATCGACAACG--TAAAGAGCAAGATTCAAGATAAGGAGGGCATCCCTCCCGATC 771059
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| || || | |||||| |||||||| || |||| ||||| || |||||||
Sbjct 771058 AGCAGCGCCTTATCTTCGCGGGTAAACAGCTCGAGGACGGTCGCACTCTTTCGGACTACA 770999
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
| ||||||||||| | || ||||| |||||||| ||| || | |||||
Sbjct 770998 ATATCCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGCGG 770950
>seq29
Length=430389
Score = 107 bits (118), Expect = 2e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| |||||||||||| | ||||| ||||| || || | ||| ||||| ||||| ||
Sbjct 67475 GACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 67534
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| || |||||| ||||||||||||||| ||||| |||| || || ||||| ||
Sbjct 67535 GACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTC 67594
Query 38457 CG 38458
||
Sbjct 67595 CG 67596
>seq16
Length=934283
Score = 104 bits (114), Expect = 2e-17
Identities = 102/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| || || ||||| |||||| | ||||| ||||| || || | ||| |||||
Sbjct 373885 AAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 373826
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| ||||| ||| ||||||||||||||| ||||| | ||||| ||
Sbjct 373825 CAGCTCGAGGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCAACGCTCCAC 373766
Query 38448 TTGGTGCTGCGT 38459
||||| || |||
Sbjct 373765 TTGGTCCTCCGT 373754
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172368600960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |