Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq18 163 3e-35 seq6 127 2e-24 seq29 107 2e-18 seq16 104 2e-17 >seq18 Length=888533 Score = 163 bits (180), Expect = 3e-35 Identities = 202/276 (73%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| ||||| | || ||||| | ||||||||| ||| || || Sbjct 234948 GTATGTGTCGATGAGCAGAGAATATGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAA 235007 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || |||||| | || ||||| | || |||||||| || || Sbjct 235008 ACCGTAGAAGCATCGTGCCTCGGGGATTTGTACTTCGCCGGAAAAGCGCTCGACGAGGTT 235067 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 |||||||| ||||||||| ||| ||||| ||||| || ||||| |||||| ||| Sbjct 235068 CTCGTTGACAATGCCGTCGGAGGCAGCGAAGAAGGCGAGGACGTGGGAGATGAAGAAGCG 235127 Query 133347 CTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||||| ||||||||| ||| | |||||| | |||||||| || || | ||||| Sbjct 235128 CTCGTCGTCGTTCAATCGCTTGTTCCAGTCATGGAGATCCTTGGAAAGATCAATTTCCTC 235187 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| || || |||||||| || |||||||| Sbjct 235188 AGCAGTCCAGAAGGAAGCCTCGGCCTTCTTGTACAT 235223 Score = 116 bits (128), Expect = 4e-21 Identities = 316/480 (66%), Gaps = 8/480 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| || || || || || || | | || ||| | ||| || || ||||||||| Sbjct 234358 TTCTCGAAGAAGTTGGTCTTGCCAGCTAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTG 234417 Query 132685 GCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCG 132744 | | |||||| ||||||| | || | | ||||| | ||||| |||||||| Sbjct 234418 GTGGCATTGTAGACCTTGGTGTTGCCGAGAGCCAACAGCAGGCGATCGGCAACGAACTCA 234477 Query 132745 ATGTATTGCGACAT---GGTTTCGCAATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTC 132800 ||||| || |||| ||| || || | || || || |||| || || || || Sbjct 234478 ATGTACTGGCACATAAGGGTGGCG---TTCATACCAAGAAGTGCGCAGGGG-AGAGCCTC 234533 Query 132801 GGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGC 132860 | | | || |||||| || | ||| || || |||| ||| || || | || Sbjct 234534 GCTCAAGAACTCTTGCTCAATTGTGACAGCCTCAGTGATGATGGCCTGGACAGACTCCTT 234593 Query 132861 GCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTC 132920 ||| || || | | | | ||| | || ||| || || || ||||| ||||| Sbjct 234594 GCTGGGGCGGTTGTTGAGAAGAGAGAAGAGCAGGCATGCGAAATCAGTATGCATACCCTC 234653 Query 132921 GTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAG 132980 ||| | ||| ||||| |||||| ||| |||| || ||||| || || || || ||||| Sbjct 234654 GTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGACCTGGCATCAGACCACGCTTCTTGAG 234713 Query 132981 CCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 |||||| |||| || || ||| ||||||| |||||| ||||| || || || || Sbjct 234714 CCAAAAGATGGACGCAAAGGAGCCGCTGAAGAAGATGCCCTCCACGGCAGCAAATGCGAC 234773 Query 133041 CAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 || || | | |||| || | | ||| | |||||| || || ||||| || ||||| Sbjct 234774 GAGACGGTTGGCGAAAGTAGAGTTCTTGTCAGAGATCCATCGAAGGGCCCAATCAGCCTT 234833 >seq6 Length=1708680 Score = 127 bits (140), Expect = 2e-24 Identities = 161/218 (74%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || ||||||||| |||| ||||| | | Sbjct 771404 ATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTCGAATCGTCA 771345 Query 38304 GACAGCGTGCA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| |||||| ||||||| ||||| ||||| |||||| | || | Sbjct 771344 GATACCATTGATAACG--TAAAGAGCAAAATCCAAGACAAGGAGGGTATTCCCCCAGATC 771287 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| || || ||||| || |||| ||||| ||| ||||||| Sbjct 771286 AGCAGCGCTTGATCTTCGCAGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACA 771227 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| || |||||| | || || || ||||| || ||| Sbjct 771226 ACATTCAGAAGGAATCTACACTCCACTTGGTTCTTCGT 771189 Score = 116 bits (128), Expect = 4e-21 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| ||||| |||||||| || ||||||||| | || |||||| | | Sbjct 771632 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 771573 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | || | | |||| || |||| || || ||||| ||||| | |||| Sbjct 771572 GATACTATCGACAATG--TCAAGAGCAAGATCCAGGATAAGGAGGGCATTCCTCCTGACC 771515 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| ||||| ||||| || || | ||||||||| ||||||| Sbjct 771514 AGCAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGCACCCTGTCGGACTACA 771455 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| |||||| |||| || ||| | || || || Sbjct 771454 ACATCCAGAAGGAATCGACCCTCCATCTCGTCCTCCG 771418 Score = 114 bits (126), Expect = 1e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | || ||||| || ||||| | || || ||| | | Sbjct 771176 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACAATCACTCTAGAGGTTGAGTCGTCT 771117 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| |||||| || || | || || ||||| || || |||| | Sbjct 771116 GACACCATCGACAACG--TAAAGAGCAAGATTCAAGATAAGGAGGGCATCCCTCCCGATC 771059 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | |||||| |||||||| || |||| ||||| || ||||||| Sbjct 771058 AGCAGCGCCTTATCTTCGCGGGTAAACAGCTCGAGGACGGTCGCACTCTTTCGGACTACA 770999 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 | ||||||||||| | || ||||| |||||||| ||| || | ||||| Sbjct 770998 ATATCCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGCGG 770950 >seq29 Length=430389 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| |||||||||||| | ||||| ||||| || || | ||| ||||| ||||| || Sbjct 67475 GACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 67534 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| || |||||| ||||||||||||||| ||||| |||| || || ||||| || Sbjct 67535 GACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTC 67594 Query 38457 CG 38458 || Sbjct 67595 CG 67596 >seq16 Length=934283 Score = 104 bits (114), Expect = 2e-17 Identities = 102/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || ||||| |||||| | ||||| ||||| || || | ||| ||||| Sbjct 373885 AAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 373826 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| ||||| ||| ||||||||||||||| ||||| | ||||| || Sbjct 373825 CAGCTCGAGGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCAACGCTCCAC 373766 Query 38448 TTGGTGCTGCGT 38459 ||||| || ||| Sbjct 373765 TTGGTCCTCCGT 373754 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172368600960