Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq6 322 6e-83 seq17 118 1e-21 seq15 111 2e-19 seq2 105 8e-18 >seq6 Length=1708680 Score = 322 bits (356), Expect = 6e-83 Identities = 791/1201 (66%), Gaps = 75/1201 (6%) Strand=Plus/Plus Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069 ||||| | ||||| ||||| ||||| | || || || ||||| ||||| |||||||| Sbjct 533371 TCACCGGACAAGATAGCGGCCTGGACGGCAGCACCATAGGCGACAGCCTCGTCGGGGTTG 533430 Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129 || | || || |||| || ||||| || | || || | ||| | || | || ||| Sbjct 533431 ATGGACTTGTTGGGTTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGG 533490 Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189 || || || || || || ||||| ||||| || | || || || |||||||| | Sbjct 533491 ATACGAGTGGAACCGCCAACCAAGACGATCTCGTGTACGGAAGACTTGTCGATCTTAGCA 533550 Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249 || ||||| ||||| || ||||| |||||| | ||| || || ||| Sbjct 533551 TCGCGAAGGACACGCTCGACGGGCTCCATGGTAGAACGGAAGAGATCCTGGCAGAGCTCC 533610 Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309 || || | ||||| || || || || |||||||| | ||| ||||| | |||||||| Sbjct 533611 TCGAACCTGGCACGAGTGATTGAGGTGTAGAAATCGATGCCCTCGTACAGGGAATCAATC 533670 Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369 || |||| || || || | |||||| | |||||||| || ||||| || || || || Sbjct 533671 TCGATGGAGGTCTGCGCAGACGAAGAAAGGGTTCGCTTGGCACGCTCGCATGCAGTGCGG 533730 Query 7370 AAACGACGAAGGGCAC--GCG-----GGTTA----------------------------- 7393 | || | |||||||| ||| ||||| Sbjct 533731 AGGCGTCTAAGGGCACGAGCGTTGGTGGTTAGATCCTAATAATAGTTAGCTGAAGGCTCT 533790 Query 7394 CCGG-------AAATA-----TCTT-------TCTTATGTTTACGTTTAAACTCTTCAGA 7434 | || |||| |||| |||| || || ||||| ||||| | Sbjct 533791 CTGGCAGTTTCAAATGGGGTTTCTTCATACCTTCTTGTGCTTGCGTTTGAACTCAGAGGT 533850 Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494 |||||| | |||||| ||||| || ||||||||||| || || || || ||||| Sbjct 533851 GAAGTGGTTCACGAGTCTGTTGTCGAAGTCCTCACCACCCAAATGAGTGTCTCCGGCGGT 533910 Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554 | ||||| || |||||||| | || || | || | |||||||| || |||||||| Sbjct 533911 GGACTTGACCTCGAAGATACCCTCCTCGATAGTCAAGAGAGAAACATCGAAAGTACCACC 533970 Query 7555 ACCCAGGTCAAAAATGAGTACGTT-CG-TATC--GTCGTCTTTGTTCTTATCGAGACCGT 7610 ||||| ||| || ||||| || || || | || || ||| ||||| || ||||| | Sbjct 533971 ACCCAAGTCGAAGATGAGGACATTGCGCTCTCCAGTAGTC----TTCTTGTCAAGACCAT 534026 Query 7611 ACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAG 7670 | ||||| || || || || || || || || ||||| || ||| ||||| ||||| Sbjct 534027 AGGCGATGGCAGCGGCGGTAGGCTCGTTGATGATACGGAGGACGTTGAGGCCGGCAATGA 534086 Query 7671 TTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGA 7730 | ||||| || || ||||| || || || ||||| |||||||| || || || |||| Sbjct 534087 GACCAGCATCCTTGGTAGCTTGACGCTGTGAGTCGTTGAAGTAGGCGGGTACAGTGACGA 534146 Query 7731 CCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAA 7790 | |||| |||| | || || || || || || | || |||| ||||| || | Sbjct 534147 CAGCGTTGTTGACGGTGCAGCCAAGGTAGGACTCGGCAGTCTCCCTCATCTTGGTCAGGA 534206 Query 7791 CCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAA 7850 |||| ||||| ||||| || | | || ||| || || || || || || | | Sbjct 534207 CCATGGATGAGATCTCCTCGGGGGTGAAGGTCTTCTCCTCGCCCTTGAACTCGACCTGGA 534266 Query 7851 TCATGGGTTTATCCGCAGCACC---GGGGATAACCTTATACGACCAATCTTTCATATCGT 7907 | | || || || |||| | || ||||| | | ||| ||||| ||| Sbjct 534267 TGACAGGCTT----GC--CACCCTTGTCGACGACCTTGAAGGGGAAATGCTTCATGTCGG 534320 Query 7908 CTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGT 7967 | ||||||| || | ||||| | ||||| || |||||||| || || || |||| Sbjct 534321 CCTGGACCTCAGCATCGGCGAACTTGCGACCGATGAGGCGCTTTGCGTCGAAGACAGTGT 534380 Query 7968 TTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTT 8027 | | ||||||||||| |||||||| |||| ||| ||||| || || || | | | Sbjct 534381 TGATAGGGTTCATGGCGACCTGGTTCTTGGCCGAGTCACCGATGAGGCGCTC---AGTGT 534437 Query 8028 CCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTA 8087 | || || || ||| |||| || || || || || || |||||||| || || || || | Sbjct 534438 CGGTGAAAGCCACGAACGAGGGAGTGGTGCGGTTTCCCTGGTCGTTGGCGATGATCTCGA 534497 Query 8088 CGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTG 8147 |||||| | | ||| ||| |||||||| || || || || ||||| |||||||| | Sbjct 534498 TGCGGTCATCACGGAAGATGCCTACGCACGAGTAGGTCGTACCCAAATCGATACCGATCG 534557 Query 8148 C 8148 | Sbjct 534558 C 534558 Score = 118 bits (130), Expect = 1e-21 Identities = 240/354 (68%), Gaps = 2/354 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | || || || || ||||| | | ||| || || | || Sbjct 881004 TCGAAATCCTCACCACCGAGATGAGTGTCACCAGCGGTAGACTGGACCTCGAAAACGCCC 880945 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | | | || ||||| || ||||||||||| || || | | || || Sbjct 880944 TCCTCAATAGTCAGGATGGACACATCGAAGGTACCACCACCGAGATCGTATACAAGGACC 880885 Query 7577 T-TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 | ||| || | | | | |||| || || || || |||| ||| || || || ||||| Sbjct 880884 TGGCGT-TCCTTCTGATCGGTCTTGTCAAGGCCATAAGCGAGAGCGGCGGCGGTGGGTTC 880826 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || | | ||| ||| ||| || || || |||||| | || || || || || || Sbjct 880825 GTTGACGACACGGAGAACGTTGAGACCGGCGATAGTTCCAGCGTCCTTTGTGGCGGCACG 880766 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || | ||||| |||||||| || || || || || |||| | | ||| || |||||| Sbjct 880765 CTGGGCGTCGTTGAAGTAGGCGGGAACAGTGACCACAGCGTTCTTAACTGGCTCACCGAG 880706 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||| | || |||| || ||||| ||| ||| ||||| | ||||| || || Sbjct 880705 ATAAGTCTCAGCGACCTCCTTCATCTTGCCAAGGACCATGGCGGAAATTTCCTC 880652 >seq17 Length=926260 Score = 118 bits (130), Expect = 1e-21 Identities = 332/508 (65%), Gaps = 5/508 (1%) Strand=Plus/Plus Query 105474 GTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGGACA 105533 ||| || || || ||||| | |||||| || || | |||||| |||| || ||||| Sbjct 106773 GTAGAGCTCCTCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACA 106832 Query 105534 AAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACAT 105593 |||| | ||| | ||||| || ||||| |||||||| | ||| || ||||||| Sbjct 106833 GAACAGCGTCCATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAA 106892 Query 105594 GGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAG 105653 || | ||||| || ||| | ||||||| | || || ||| || | || || Sbjct 106893 AGCGTAGAAGAGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAG 106952 Query 105654 AAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTAC---- 105709 || ||| | ||||||||||||||| || | ||||| |||| | || || Sbjct 106953 GAAGCCGAAGACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTT 107012 Query 105710 GACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAA 105769 | ||| | | || | || || | ||| || ||| || || || | ||| ||||| | Sbjct 107013 GTTGCCAC-CCTGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGA 107071 Query 105770 TACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAA 105829 ||||| || ||||| || || |||| || | || | ||||| | | || | Sbjct 107072 GACCATTCGAAGTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCA 107131 Query 105830 CGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGT 105889 ||| | |||||||| ||||| ||| ||| ||||| || | ||| |||| Sbjct 107132 CGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGT 107191 Query 105890 AAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTC 105949 | |||||||| || || || || || | |||| ||||| || || ||||| || || Sbjct 107192 AGATACCGTCAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGG 107251 Query 105950 TGGGTGTACCAGCATTGAACAGAGTTGG 105977 || || || || ||||| || || || Sbjct 107252 ATGGAGTGCCTGCGTTGAAGAGCGTCGG 107279 >seq15 Length=938269 Score = 111 bits (122), Expect = 2e-19 Identities = 222/327 (68%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | ||||| || || ||| | ||||| ||||||| || Sbjct 545851 TCGAAATCCTCACCACCGAGATGTGTGTCACCGTTGGTAGACTTGACCTCAAAGACGCCA 545792 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | |||| ||| || ||||||||||| || || | | |||| Sbjct 545791 GACTGGATCTCGAGGATGGAAATATCGAAAGTACCACCACCAAGATCGTAGACAGCTACG 545732 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||||| | | |||| |||||||||| || | ||| || || || || || Sbjct 545731 ACGTTATCGGTGGCCTTGT------CGAGACCGTAGGCAAGAGCAGCTGCGGTGGGCTCG 545678 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCG 7695 || | || ||| || ||| || || ||||| | ||| ||||| || || || || || Sbjct 545677 TTGACAACACGGAGGACGTTAAGACCGGCAAT-CTGGCCAGCATCCTTGGTGGCCTGGCG 545619 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || ||||| |||||||| || || || ||||| |||| | |||| ||||| || | Sbjct 545618 CTGGGAGTCGTTGAAGTAGGCGGGCACGGTGACGACGGCGTTCTTGACATTCTTGCCCAT 545559 Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782 || || || ||| | || ||||| || Sbjct 545558 GTAGGACTCGGCGGTCTCCTTCATCTT 545532 >seq2 Length=2710459 Score = 105 bits (116), Expect = 8e-18 Identities = 203/299 (68%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543 || || || || || ||||| |||| ||| || | |||| | | || ||||| Sbjct 1625842 TCTCCAGCAGTAGCCTTGACGGTGAAGACACCACCCTGGATGTGAAGAAGAGAGACATCG 1625901 Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCTTA 7600 || ||||||||||| || || | ||||| || ||| | || | ||| || | Sbjct 1625902 AAAGTACCACCACCGAGATCGTAGATGAGAACATTCCTCTCCTTGTCCGACTTTCCGGAA 1625961 Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660 |||||||||| ||||| || || || || || || || || ||||| ||| ||| ||| Sbjct 1625962 CCGAGACCGTAAGCGATGGCGGCGGCGGTAGGCTCGTTGATGATACGGAGAACGTTGAGG 1626021 Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720 ||||| |||| | || || || || ||||| || || ||||| |||||||| || Sbjct 1626022 CCAGCGATAGCACCGGCGTCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGCGGGC 1626081 Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779 || || | ||| || | | ||| ||||| ||||| | | || |||| || ||||| Sbjct 1626082 ACGGTGATGACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCAGCGACCTCCTTCAT 1626140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132252197960