Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_014765.1
Length=198519
Score E
Sequences producing significant alignments: (Bits) Value
seq6 322 6e-83
seq17 118 1e-21
seq15 111 2e-19
seq2 105 8e-18
>seq6
Length=1708680
Score = 322 bits (356), Expect = 6e-83
Identities = 791/1201 (66%), Gaps = 75/1201 (6%)
Strand=Plus/Plus
Query 7010 TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTA 7069
||||| | ||||| ||||| ||||| | || || || ||||| ||||| ||||||||
Sbjct 533371 TCACCGGACAAGATAGCGGCCTGGACGGCAGCACCATAGGCGACAGCCTCGTCGGGGTTG 533430
Query 7070 ATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGG 7129
|| | || || |||| || ||||| || | || || | ||| | || | || |||
Sbjct 533431 ATGGACTTGTTGGGTTCCTTGCCGTTGAAGAAGTCGGAGACCATCTTCTGGACCTTGGGG 533490
Query 7130 ATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAG 7189
|| || || || || || ||||| ||||| || | || || || |||||||| |
Sbjct 533491 ATACGAGTGGAACCGCCAACCAAGACGATCTCGTGTACGGAAGACTTGTCGATCTTAGCA 533550
Query 7190 TCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCC 7249
|| ||||| ||||| || ||||| |||||| | ||| || || |||
Sbjct 533551 TCGCGAAGGACACGCTCGACGGGCTCCATGGTAGAACGGAAGAGATCCTGGCAGAGCTCC 533610
Query 7250 TCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATT 7309
|| || | ||||| || || || || |||||||| | ||| ||||| | ||||||||
Sbjct 533611 TCGAACCTGGCACGAGTGATTGAGGTGTAGAAATCGATGCCCTCGTACAGGGAATCAATC 533670
Query 7310 TCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGT 7369
|| |||| || || || | |||||| | |||||||| || ||||| || || || ||
Sbjct 533671 TCGATGGAGGTCTGCGCAGACGAAGAAAGGGTTCGCTTGGCACGCTCGCATGCAGTGCGG 533730
Query 7370 AAACGACGAAGGGCAC--GCG-----GGTTA----------------------------- 7393
| || | |||||||| ||| |||||
Sbjct 533731 AGGCGTCTAAGGGCACGAGCGTTGGTGGTTAGATCCTAATAATAGTTAGCTGAAGGCTCT 533790
Query 7394 CCGG-------AAATA-----TCTT-------TCTTATGTTTACGTTTAAACTCTTCAGA 7434
| || |||| |||| |||| || || ||||| ||||| |
Sbjct 533791 CTGGCAGTTTCAAATGGGGTTTCTTCATACCTTCTTGTGCTTGCGTTTGAACTCAGAGGT 533850
Query 7435 GAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGT 7494
|||||| | |||||| ||||| || ||||||||||| || || || || |||||
Sbjct 533851 GAAGTGGTTCACGAGTCTGTTGTCGAAGTCCTCACCACCCAAATGAGTGTCTCCGGCGGT 533910
Query 7495 CGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACC 7554
| ||||| || |||||||| | || || | || | |||||||| || ||||||||
Sbjct 533911 GGACTTGACCTCGAAGATACCCTCCTCGATAGTCAAGAGAGAAACATCGAAAGTACCACC 533970
Query 7555 ACCCAGGTCAAAAATGAGTACGTT-CG-TATC--GTCGTCTTTGTTCTTATCGAGACCGT 7610
||||| ||| || ||||| || || || | || || ||| ||||| || ||||| |
Sbjct 533971 ACCCAAGTCGAAGATGAGGACATTGCGCTCTCCAGTAGTC----TTCTTGTCAAGACCAT 534026
Query 7611 ACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAG 7670
| ||||| || || || || || || || || ||||| || ||| ||||| |||||
Sbjct 534027 AGGCGATGGCAGCGGCGGTAGGCTCGTTGATGATACGGAGGACGTTGAGGCCGGCAATGA 534086
Query 7671 TTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGA 7730
| ||||| || || ||||| || || || ||||| |||||||| || || || ||||
Sbjct 534087 GACCAGCATCCTTGGTAGCTTGACGCTGTGAGTCGTTGAAGTAGGCGGGTACAGTGACGA 534146
Query 7731 CCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAA 7790
| |||| |||| | || || || || || || | || |||| ||||| || |
Sbjct 534147 CAGCGTTGTTGACGGTGCAGCCAAGGTAGGACTCGGCAGTCTCCCTCATCTTGGTCAGGA 534206
Query 7791 CCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAA 7850
|||| ||||| ||||| || | | || ||| || || || || || || | |
Sbjct 534207 CCATGGATGAGATCTCCTCGGGGGTGAAGGTCTTCTCCTCGCCCTTGAACTCGACCTGGA 534266
Query 7851 TCATGGGTTTATCCGCAGCACC---GGGGATAACCTTATACGACCAATCTTTCATATCGT 7907
| | || || || |||| | || ||||| | | ||| ||||| |||
Sbjct 534267 TGACAGGCTT----GC--CACCCTTGTCGACGACCTTGAAGGGGAAATGCTTCATGTCGG 534320
Query 7908 CTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGT 7967
| ||||||| || | ||||| | ||||| || |||||||| || || || ||||
Sbjct 534321 CCTGGACCTCAGCATCGGCGAACTTGCGACCGATGAGGCGCTTTGCGTCGAAGACAGTGT 534380
Query 7968 TTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTT 8027
| | ||||||||||| |||||||| |||| ||| ||||| || || || | | |
Sbjct 534381 TGATAGGGTTCATGGCGACCTGGTTCTTGGCCGAGTCACCGATGAGGCGCTC---AGTGT 534437
Query 8028 CCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTA 8087
| || || || ||| |||| || || || || || || |||||||| || || || || |
Sbjct 534438 CGGTGAAAGCCACGAACGAGGGAGTGGTGCGGTTTCCCTGGTCGTTGGCGATGATCTCGA 534497
Query 8088 CGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTG 8147
|||||| | | ||| ||| |||||||| || || || || ||||| |||||||| |
Sbjct 534498 TGCGGTCATCACGGAAGATGCCTACGCACGAGTAGGTCGTACCCAAATCGATACCGATCG 534557
Query 8148 C 8148
|
Sbjct 534558 C 534558
Score = 118 bits (130), Expect = 1e-21
Identities = 240/354 (68%), Gaps = 2/354 (1%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||| | || || || || ||||| | | ||| || || | ||
Sbjct 881004 TCGAAATCCTCACCACCGAGATGAGTGTCACCAGCGGTAGACTGGACCTCGAAAACGCCC 880945
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| ||||| | | | || ||||| || ||||||||||| || || | | || ||
Sbjct 880944 TCCTCAATAGTCAGGATGGACACATCGAAGGTACCACCACCGAGATCGTATACAAGGACC 880885
Query 7577 T-TCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635
| ||| || | | | | |||| || || || || |||| ||| || || || |||||
Sbjct 880884 TGGCGT-TCCTTCTGATCGGTCTTGTCAAGGCCATAAGCGAGAGCGGCGGCGGTGGGTTC 880826
Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695
|| | | ||| ||| ||| || || || |||||| | || || || || || ||
Sbjct 880825 GTTGACGACACGGAGAACGTTGAGACCGGCGATAGTTCCAGCGTCCTTTGTGGCGGCACG 880766
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| | ||||| |||||||| || || || || || |||| | | ||| || ||||||
Sbjct 880765 CTGGGCGTCGTTGAAGTAGGCGGGAACAGTGACCACAGCGTTCTTAACTGGCTCACCGAG 880706
Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809
||| | || |||| || ||||| ||| ||| ||||| | ||||| || ||
Sbjct 880705 ATAAGTCTCAGCGACCTCCTTCATCTTGCCAAGGACCATGGCGGAAATTTCCTC 880652
>seq17
Length=926260
Score = 118 bits (130), Expect = 1e-21
Identities = 332/508 (65%), Gaps = 5/508 (1%)
Strand=Plus/Plus
Query 105474 GTAAAGATCTTCAAACTCTTTACCGTACACGTCTGAAAGACCCTTTGCCTGATCAGGACA 105533
||| || || || ||||| | |||||| || || | |||||| |||| || |||||
Sbjct 106773 GTAGAGCTCCTCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACA 106832
Query 105534 AAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATCCACAT 105593
|||| | ||| | ||||| || ||||| |||||||| | ||| || |||||||
Sbjct 106833 GAACAGCGTCCATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAA 106892
Query 105594 GGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATTTCGAG 105653
|| | ||||| || ||| | ||||||| | || || ||| || | || ||
Sbjct 106893 AGCGTAGAAGAGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAG 106952
Query 105654 AAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAATAGACCCTTTAC---- 105709
|| ||| | ||||||||||||||| || | ||||| |||| | || ||
Sbjct 106953 GAAGCCGAAGACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTT 107012
Query 105710 GACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATTGGAATAA 105769
| ||| | | || | || || | ||| || ||| || || || | ||| ||||| |
Sbjct 107013 GTTGCCAC-CCTGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGA 107071
Query 105770 TACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACATCGTGAA 105829
||||| || ||||| || || |||| || | || | ||||| | | || |
Sbjct 107072 GACCATTCGAAGTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCA 107131
Query 105830 CGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACTGTATCGT 105889
||| | |||||||| ||||| ||| ||| ||||| || | ||| ||||
Sbjct 107132 CGTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGT 107191
Query 105890 AAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATTTGTGGTC 105949
| |||||||| || || || || || | |||| ||||| || || ||||| || ||
Sbjct 107192 AGATACCGTCAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGG 107251
Query 105950 TGGGTGTACCAGCATTGAACAGAGTTGG 105977
|| || || || ||||| || || ||
Sbjct 107252 ATGGAGTGCCTGCGTTGAAGAGCGTCGG 107279
>seq15
Length=938269
Score = 111 bits (122), Expect = 2e-19
Identities = 222/327 (68%), Gaps = 8/327 (2%)
Strand=Plus/Minus
Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516
|||||||| |||||||| | ||||| || || ||| | ||||| ||||||| ||
Sbjct 545851 TCGAAATCCTCACCACCGAGATGTGTGTCACCGTTGGTAGACTTGACCTCAAAGACGCCA 545792
Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576
| || | | | |||| ||| || ||||||||||| || || | | ||||
Sbjct 545791 GACTGGATCTCGAGGATGGAAATATCGAAAGTACCACCACCAAGATCGTAGACAGCTACG 545732
Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636
||||| | | |||| |||||||||| || | ||| || || || || ||
Sbjct 545731 ACGTTATCGGTGGCCTTGT------CGAGACCGTAGGCAAGAGCAGCTGCGGTGGGCTCG 545678
Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTCG 7695
|| | || ||| || ||| || || ||||| | ||| ||||| || || || || ||
Sbjct 545677 TTGACAACACGGAGGACGTTAAGACCGGCAAT-CTGGCCAGCATCCTTGGTGGCCTGGCG 545619
Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755
|| || ||||| |||||||| || || || ||||| |||| | |||| ||||| || |
Sbjct 545618 CTGGGAGTCGTTGAAGTAGGCGGGCACGGTGACGACGGCGTTCTTGACATTCTTGCCCAT 545559
Query 7756 ATACGATTCCGCGATATCTTTCATTTT 7782
|| || || ||| | || ||||| ||
Sbjct 545558 GTAGGACTCGGCGGTCTCCTTCATCTT 545532
>seq2
Length=2710459
Score = 105 bits (116), Expect = 8e-18
Identities = 203/299 (68%), Gaps = 3/299 (1%)
Strand=Plus/Plus
Query 7484 TCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCA 7543
|| || || || || ||||| |||| ||| || | |||| | | || |||||
Sbjct 1625842 TCTCCAGCAGTAGCCTTGACGGTGAAGACACCACCCTGGATGTGAAGAAGAGAGACATCG 1625901
Query 7544 AACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTC---TTTGTTCTTA 7600
|| ||||||||||| || || | ||||| || ||| | || | ||| || |
Sbjct 1625902 AAAGTACCACCACCGAGATCGTAGATGAGAACATTCCTCTCCTTGTCCGACTTTCCGGAA 1625961
Query 7601 TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGG 7660
|||||||||| ||||| || || || || || || || || ||||| ||| ||| |||
Sbjct 1625962 CCGAGACCGTAAGCGATGGCGGCGGCGGTAGGCTCGTTGATGATACGGAGAACGTTGAGG 1626021
Query 7661 CCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGG 7720
||||| |||| | || || || || ||||| || || ||||| |||||||| ||
Sbjct 1626022 CCAGCGATAGCACCGGCGTCCTTGGTGGCTTGACGCTGGTTGTCGTTGAAGTAGGCGGGC 1626081
Query 7721 ACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCAT 7779
|| || | ||| || | | ||| ||||| ||||| | | || |||| || |||||
Sbjct 1626082 ACGGTGATGACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCAGCGACCTCCTTCAT 1626140
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 635132252197960
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