Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq17 255 7e-63 seq6 131 2e-25 seq32 91.5 2e-13 >seq17 Length=926260 Score = 255 bits (282), Expect = 7e-63 Identities = 1057/1648 (64%), Gaps = 61/1648 (4%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| ||||| ||||||||| |||||| | | ||||| || | | Sbjct 105664 CGGAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATCGACGTG 105723 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | || || || ||| | ||| | |||||||||||||||||||| Sbjct 105724 ATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTGAGAGACTGAGACTGATCGATGAAG 105783 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAA----TTTCCCAGACAGT 109583 |||||| ||||| ||||| | |||||| || ||| | ||||||| ||||| Sbjct 105784 GCACCACGGTCAGCAGCCATCTGGATGATGG----TTCGCTGAGAGATTTCCCAAACAGT 105839 Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643 |||||| | | ||||| | || || ||||||| ||| ||| || |||||||| | Sbjct 105840 CTTGTAAAGAGTCTTGGTCTCTTCAGGAATGTTGGGAATGCGTTGGATGGAGCCACCTTC 105899 Query 109644 CTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC 109700 | || |||| ||| |||||| | | ||||| ||||| | | ||||| | Sbjct 105900 -TGCA--ATGATACGATTCTTCATGTTCTCAGACCACAGACCCATATCGACCAGATCCTT 105956 Query 109701 AACAAG--ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATG 109758 || || ||| |||||| || || |||||||| || || ||| ||||||| Sbjct 105957 AAGCAGCCATGG--GTTGACGACTTGGAACTCACCAGCGAGCACACGGCGGGAGTAGATG 106014 Query 109759 TTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTG 109818 || | ||||| || || || ||||| ||||| || ||||| || | || || || || Sbjct 106015 TTCGATGTGTATGGCTCAAAGCACTCGTTGTTTCCGAGGATCTGAGAGGTAGATGCAGTT 106074 Query 109819 GGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATT 109878 |||||||| || || | |||| ||| || | ||| | | | | ||| || Sbjct 106075 GGCATGGGTGCAATCAAAAGAGAGTTGCGAACACCATGCTGAGCAATCTTCTCCTTCAGG 106134 Query 109879 GCGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGT 109938 | | |||| || | || || || |||| || | |||||| || ||||| Sbjct 106135 GAGGCCCAGTCCCACAGATCAGTAGG---AGTCACA---TTCCACATGTCGTACTGAAGA 106188 Query 109939 ACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAAC 109998 | ||||| || | || ||||||| | | ||| ||| | || ||| ||| | Sbjct 106189 ATACCCTGAGACACTGGCGAACCCTCGTAGGTCTGGTATGGGCCGAGTTCCTTGGCGATG 106248 Query 109999 TCG---GATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATG-------AGC 110048 || ||||||| || || || || || || || || || || || ||| Sbjct 106249 TCACAAGATGAAGTG---AGGGCGGCGTGGTAGATGGTTTCGAAGATCTGGATGTTGAGC 106305 Query 110049 ATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGA-ATAAACACATCCG 110107 ||| || | |||| | |||||||| | | | || || | || |||| | Sbjct 106306 -TTCTTG------GCCTCTGGCGACTCGAAGGGCA-AGCGCAGAGCCAGGAAAGCATCAG 106357 Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTT 110167 | ||||| || ||||| | ||||| || | || | ||| ||| || || | Sbjct 106358 CAAGACCTTGGACACCCATGCCAATAGGCCTGTGGCGGAAGTTGCTGCGACGTGCCTCCT 106417 Query 110168 CTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGA 110227 | || ||||| |||| ||||||| | || | ||| || ||| || |||| Sbjct 106418 CGACTGGGTAGTGGTTGACCTCGATGATCTTGTTCAAATTGCGAGTGACAACCTGGGTGA 106477 Query 110228 TTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTC-CTT---ATTGACATATTTGGGG 110283 || || || || | | | |||||| ||| | | ||| || ||| | ||| Sbjct 106478 CCTCGTGAAGCTTTTGGAAGTCGAAC----TCGCCACGCTTGTAATCAACAAAGGATGGG 106533 Query 110284 AGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATT 110343 ||||||| || ||||||||||| |||| |||||| | ||||| || | || Sbjct 106534 AGAGCAAGGGAAGCAAGATTGCAGACAGCCACCTCGTCAGGAGCAGTGTACTCGATGATC 106593 Query 110344 TCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTG 110403 || || || | |||||| || || ||||| ||||||||| || || |||| Sbjct 106594 TCAGTGCAGAGGTTGGAGCTTCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTCCTGTTG 106653 Query 110404 CATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCC 110463 || || ||||| ||||||||| | ||| ||||||| || ||||| | || ||||||||| Sbjct 106654 CAGGCGTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGCGCCTCGAGAATGGCA 106713 Query 110464 TTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGT 110522 | ||| | | || | ||| |||| ||| | | | || |||| |||||| | Sbjct 106714 TACCAAAGCTTCTG-GGCACGGACGGTTTCACGACCACGATTCTCCTTCTCGTAGCGGTG 106772 Query 110523 GTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACA 110582 ||| | ||||| || || | ||||| ||||| | |||||| |||| | |||||| Sbjct 106773 GTAGAGCTCCTCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACA 106832 Query 110583 GAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACAT 110642 ||| || | ||| | ||| ||| | || | ||||||||| || || || ||||||| Sbjct 106833 GAACAGCGTCCATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAA 106892 Query 110643 CGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAA 110702 || |||| || ||||| || ||||||| | || ||||| ||| | || | Sbjct 106893 AGCGTAGAAGAGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAG 106952 Query 110703 AAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG--- 110759 ||| | | || ||| | ||||||||| || ||||||| || | || || ||| Sbjct 106953 GAAGCCGAAGACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTT 107012 Query 110760 ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAAT 110819 || |||||| ||| || ||||||||| ||| |||| | |||||||||||| | Sbjct 107013 GTTGCCACCCTGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAG 107072 Query 110820 TCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGAT 110879 |||| || || || || || | || ||| ||||||| || || | Sbjct 107073 ACCATTCGAAGTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCAC 107132 Query 110880 ATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCAT 110938 | | |||||||| || || ||| || ||||| ||| | ||||| | | Sbjct 107133 GTTGAGGCCAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCT-TCAGTGTGTCGT 107191 Query 110939 AAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGAC 110998 | ||||| ||||| || | || || |||| || ||||| || ||||||||||| Sbjct 107192 AGATACCGTCAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGG 107251 Query 110999 GAGGCGTTCCCGCATTGAAGAGTGTAGG 111026 || || || || |||||||| || || Sbjct 107252 ATGGAGTGCCTGCGTTGAAGAGCGTCGG 107279 >seq6 Length=1708680 Score = 131 bits (144), Expect = 2e-25 Identities = 337/505 (67%), Gaps = 19/505 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 ||||||||||| || || ||||| ||||| || || | |||| | |||| || ||| Sbjct 642607 CGATCGAAACGTCCGGGTCGGAGAAGAGCGGAGTCGAGCAAATCGGCGTGGTTAGTGGCG 642666 Query 11563 GCAATGACTACAATGCCAGTCTCATTG-TCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 || |||| | | ||| || | ||| |||||||| || | || ||||||| ||||| Sbjct 642667 GCTATGAAGATGACGCCGGTG-CTTTGATCGAAACCATCGAGGTCATTGAGAAGTTGGTT 642725 Query 11622 GATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCTTACCGAC 11681 | || || || | || |||| ||| ||| | | ||||| ||| || Sbjct 642726 CAGGGTTTGG---CGGTGATAATTGG----CAT--CACGGGACTTTCGCTTTCCACCTAC 642776 Query 11682 AGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGC--CTGTTCGAAA 11739 |||||| | || || |||||||||||| ||| ||||| ||||| | || ||| Sbjct 642777 AGCGTCGAGTTCGTCAATGAATACGATAGCAGGTGCCTTGGCTCGTGCAGCGGT--GAAG 642834 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 ||||| || |||||||| ||||| ||||| ||| | | ||| |||| | | | |||| Sbjct 642835 AGTTCGCGGACACGCTTTGCTCCGACACCAACGTAGACCTCGTCGAACTCGGAGCCAGAC 642894 Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 | | |||||||||| | |||||||| | ||| || |||||||| || || || Sbjct 642895 ATGTAGAAGAAGGGAACACCGGCTTCACCAGCAACGGCACGGGCGAGGAGCGTTTTTCCA 642954 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC--ACTTCCAAAGT 11917 || ||||| | |||| | ||| | || ||||| | |||| ||| || Sbjct 642955 GTTCCAGGAGGACCAATCAAGAGGACACCCTTGGGGAGTCGGCCACCGAGCTT--GTTGT 643012 Query 11918 AGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGA 11977 | ||||| ||||||||||| || || | || ||||| |||||||| || Sbjct 643013 ACTTGTCAGGATTCTTGAGGAAATCAACGACATCGAGCAGTTCTTCCTTGGCTTCATCAC 643072 Query 11978 TACCCTCAACATCGGTGAAACGAGT 12002 || | ||| ||| |||||||||| Sbjct 643073 ATCCGTGAACGTCGCTGAAACGAGT 643097 >seq32 Length=337672 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGT 11742 ||||| |||||||||||||| | ||| || || | | ||||| | | | || | Sbjct 336286 GCGTCGATCTCATCGATGAAAATGATGCAAGGAGTGCTCTTGCGTGCGTTTGCAAACAAG 336227 Query 11743 TCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG-AACA 11801 || ||||| || |||||| || || || |||||||| || || | | || |||| Sbjct 336226 TCGCGTACGCGAGACGCTCCTACGCCAACAAACATCTCTACAAATTCAGAACCACTAACA 336167 Query 11802 CTGAATGAAGGGAACATTAGACTCACCAGC-GATGGCTCGAGCGAGGAGAGTCTTACCCG 11860 ||||| ||| ||||| ||||| ||||| | || || | || | || || || || | Sbjct 336166 CTGAA-GAACGGAACTCCTGACTCTCCAGCAGTTGCCTTG-GCCAAAAGGGTTTTTCCAG 336109 Query 11861 TACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC 11906 ||||||| | || | ||||| || ||||| |||||||||||||| Sbjct 336108 TACCAGGCGGGCCGGAGAGAATTGCACCACGCGGGATCTTGGCACC 336063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975492008200