Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq17 203 6e-47 seq18 156 8e-33 >seq17 Length=926260 Score = 203 bits (224), Expect = 6e-47 Identities = 724/1117 (65%), Gaps = 31/1117 (3%) Strand=Plus/Plus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGA 221476 || ||||| |||||||||||||| || |||||| ||||||| |||||||||| || Sbjct 106261 GTGAGGGCGGCGTGGTAGATGGTTTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCTGGC 106320 Query 221477 GAAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 || |||||||| ||||| | | || | || || || || || || || || || Sbjct 106321 GACTCGAAGGGCAAGCGCAGAGCCAGGAAAGCATCAGCAAGACCTTGGACACCCATGCCA 106380 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGCGGCC-GCTTCTGGCACGGGATAAAAGTTGACGTC 221595 || |||||||| | |||| ||| | || || || || || |||||| || Sbjct 106381 ATAGGCCTGTGGCGGAAGTTGCT-GCGACGTGCCTCCTCGACTGGGTAGTGGTTGACCTC 106439 Query 221596 GATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATT 221655 ||| | ||||| | || |||||| || | |||||| ||||| ||| Sbjct 106440 GATGATCTTGTTCAAATTGCGAGTGACAACCTGGGTGACCTCGTGAAGCTTTTGG----- 106494 Query 221656 GAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGC 221715 || | |||||||| | | || || ||||| | || |||| | || Sbjct 106495 -AAGTCGAACTCGCCACGCTTGTAA------TCAACAAAGGATGGGAGAGCAAGGGAAGC 106547 Query 221716 CAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTT 221775 || || || || ||||||||||| || |||| |||||||| || |||||||| Sbjct 106548 AAGATTGCAGACAGCCACCTCGTCAGGAGCAGTGTACTCGATGATCTCAGTGCAGAGGTT 106607 Query 221776 GCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTA 221835 | || ||| || ||||||| || || || ||| | ||| ||||||||||| Sbjct 106608 GGAGCTTCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTA 106667 Query 221836 GAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCT 221895 |||||| || || |||||||| ||| ||| | ||||| | ||| || | ||| Sbjct 106668 GAGCATGAAAGGGTTACCAGTCTCGGTCTGCGCCTCGAGAATGGCATACCAAAGCT-TCT 106726 Query 221896 GG-CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGT 221954 || | | || || || ||| ||| | ||| || || | | |||||| | Sbjct 106727 GGGCACGGACGGTT-TCACGAC--CACGATTCTCCTTCTCGTAGCGGTGGTAGAGCTCCT 106783 Query 221955 CAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCC 222014 | |||| |||||||| | ||| | || || ||| | |||||| | ||| ||| Sbjct 106784 CGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACAGCGTCC 106843 Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074 | | || |||| ||| | || ||||||||| || |||||||||| || | |||| Sbjct 106844 ATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGTAGAAGA 106903 Query 222075 GATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAA 222134 |||| | | || ||| ||| ||||| ||| || | || || | || | || | Sbjct 106904 GATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCGAAGA 106963 Query 222135 TGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCT 222194 || |||||||| ||||| ||||||| ||| | || ||||| |||||||||||||||| Sbjct 106964 CATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCT 107023 Query 222195 GATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGAT 222253 | | || | | | | | | |||| ||| || || | || | || || || || Sbjct 107024 GGT-CAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGACCATTCGAA 107082 Query 222254 CGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TG-GCAGACATG 222310 ||||||||||| ||||| | || ||| | || ||| || | | | Sbjct 107083 GTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCAC---GGATACGATGCACGTTGAGG 107139 Query 222311 CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCC 222370 || ||||| || || || ||||||| ||| ||| |||| || ||||| ||| || Sbjct 107140 CCAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGATACCG 107199 Query 222371 TCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGA- 222429 || || |||||| || | || | || || || || |||||||||| | |||| Sbjct 107200 TCAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAG--GGGATGGAG 107257 Query 222430 -ACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488 | ||||| || ||||| || ||||||||||||||| | ||||| |||| Sbjct 107258 TGCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACATGTAGTCGT 107317 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAAT 222525 ||||||| | | | | |||||| | |||||||| Sbjct 107318 ACGTCTCAATGGCCTTCTCGATGTCATTGCCGTGAAT 107354 >seq18 Length=888533 Score = 156 bits (172), Expect = 8e-33 Identities = 311/466 (67%), Gaps = 9/466 (2%) Strand=Plus/Minus Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918 ||| | |||| || | | | || || || || |||||||| |||||||||||||| |||| Sbjct 234799 AGAACTCTACTTTCGCCAACCGTCTCGTCGCATTTGCTGCCGTGGAGGGCATCTTCTTCA 234740 Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978 |||| || |||||| ||||||| ||||||||| || || ||||| || ||| | Sbjct 234739 GCGGCTCCTTTGCGTCCATCTTTTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTGACAT 234680 Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 | ||||||||||||||| | | ||||||||| | || | ||||| || |||||||||| Sbjct 234679 TCTCCAACGAGCTCATCTCCCGCGACGAGGGTATGCATACTGATTTCGCATGCCTGCTCT 234620 Query 26039 ACACGGGCCACTTGCTCCACAA--ACCTTCTCAA-GAGACCGTCTACAGTATCATCAAAG 26095 | | ||| ||| |||| || ||| ||| | ||| | ||||||| | Sbjct 234619 TC-----TCTCTT-CTCAACAACCGCCCCAGCAAGGAGTCTGTCCAGGCCATCATCACTG 234566 Query 26096 AGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCA 26155 ||||||| || ||| | ||||| | || | Sbjct 234565 AGGCTGTCACAATTGAGCAAGAGTTCTTGAGCGAGGCTCTCCCCTGCGCACTTCTTGGTA 234506 Query 26156 TGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGC 26215 ||||| || || ||| |||| |||||||||| || ||||| | ||||||| | Sbjct 234505 TGAACGCCACCCTTATGTGCCAGTACATTGAGTTCGTTGCCGATCGCCTGCTGTTGGCTC 234446 Query 26216 TGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGT 26275 | || | ||| |||||| | | | ||||| |||||||| ||||| ||||| ||| Sbjct 234445 TCGGCAACACCAAGGTCTACAATGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGC 234386 Query 26276 TGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 | | || |||||||||||||| || ||| | || || || || || Sbjct 234385 TAGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACCA 234340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928843998871360