Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq6 279 7e-70 seq17 143 4e-29 seq15 125 9e-24 seq2 111 2e-19 seq29 86.0 8e-12 >seq6 Length=1708680 Score = 279 bits (308), Expect = 7e-70 Identities = 478/691 (69%), Gaps = 7/691 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || ||||||||||| || || || ||||| || || || | | | |||| || Sbjct 534558 GCGATCGGTATCGATTTGGGTACGACCTACTCGTGCGTAGGCATCTTCCGTGATGACCGC 534499 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 | ||||| ||| | || ||||| |||||||| || ||||| |||| ||| || || || Sbjct 534498 ATCGAGATCATCGCCAACGACCAGGGAAACCGCACCACTCCCTCGTTCGTGGCTTTCACC 534439 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | ||| || ||| | || || | || || || ||| || |||||||||||||| Sbjct 534438 GACACTGAGCGCCTCATCGGTGACTCGGCCAAGAACCAGGTCGCCATGAACCCTATCAAC 534379 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 |||||||| ||||| ||||| || || ||||||||||| | ||| | ||||| | | Sbjct 534378 ACTGTCTTCGACGCAAAGCGCCTCATCGGTCGCAAGTTCGCCGATGCTGAGGTCCAGGCC 534319 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTC--CCGGTGTGGCTGATAAGCCTATGATTA 195596 || || ||| | | | | | ||| | || | | ||||| |||||| | || Sbjct 534318 GACATGAAGCATTTCCCCT-TCAAGGTCGTCGACAAGGGTGGC----AAGCCTGTCATCC 534264 Query 195597 ATGTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGT 195656 | || || || | || ||| |||| || | ||||| || || || || ||||| Sbjct 534263 AGGTCGAGTTCAAGGGCGAGGAGAAGACCTTCACCCCCGAGGAGATCTCATCCATGGTCC 534204 Query 195657 TGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTG 195716 ||| ||||||| ||||||||| || || | | | || || || || | || || | Sbjct 534203 TGACCAAGATGAGGGAGACTGCCGAGTCCTACCTTGGCTGCACCGTCAACAACGCTGTCG 534144 Query 195717 TGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTA 195776 | |||||||| || ||||||| || ||||| || || || || ||||| |||| | | Sbjct 534143 TCACTGTACCCGCCTACTTCAACGACTCACAGCGTCAAGCTACCAAGGATGCTGGTCTCA 534084 Query 195777 TTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 |||| || || ||| || | || ||||| || || || || ||||| || || |||| Sbjct 534083 TTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCCGCTGCCATCGCCTATG 534024 Query 195837 GTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTA 195896 |||| |||||||| | | ||| ||||| | ||||| || | |||||||||| Sbjct 534023 GTCTTGACAAGAAGACTACTGGAGAGCGCAATGTCCTCATCTTCGACTTGGGTGGTGGTA 533964 Query 195897 CGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956 | || ||||| || || | | ||| || | ||||| ||||| || ||| | || || | Sbjct 533963 CTTTCGATGTTTCTCTCTTGACTATCGAGGAGGGTATCTTCGAGGTCAAGTCCACCGCCG 533904 Query 195957 GTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | || |||||| | |||||||| || ||||| Sbjct 533903 GAGACACTCATTTGGGTGGTGAGGACTTCGA 533873 Score = 179 bits (198), Expect = 5e-40 Identities = 170/217 (78%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||| ||||| || || ||| | || || || || ||||| || |||||||||| Sbjct 771181 GTGGTATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACAATCACTCTAGAGGTTGAGT 771122 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 |||| ||||| ||||| ||| | || |||||||||||||||||| ||||| || |||| Sbjct 771121 CGTCTGACACCATCGACAACGTAAAGAGCAAGATTCAAGATAAGGAGGGCATCCCTCCCG 771062 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 ||||||| || ||||| || || ||||||||||| || || || || || || | || | Sbjct 771061 ATCAGCAGCGCCTTATCTTCGCGGGTAAACAGCTCGAGGACGGTCGCACTCTTTCGGACT 771002 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 |||| | ||||||||||| ||||| ||| | || || Sbjct 771001 ACAATATCCAAAAGGAGTCCACTCTGCACTTGGTGCT 770965 Score = 172 bits (190), Expect = 7e-38 Identities = 178/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || ||||||||||||| || || || || || ||||| || |||||||||||||| || | Sbjct 771409 GTGGTATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTCGAAT 771350 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 ||||||| || || |||||| | || ||| || ||||| ||||| || ||||| || | Sbjct 771349 CGTCAGATACCATTGATAACGTAAAGAGCAAAATCCAAGACAAGGAGGGTATTCCCCCAG 771290 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATT 172036 ||||||| || | || || || || || ||||| || || || || || ||| |||| | Sbjct 771289 ATCAGCAGCGCTTGATCTTCGCAGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACT 771230 Query 172037 ACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 ||||| |||| ||||| ||||| || ||| | ||||| | || || |||||| Sbjct 771229 ACAACATTCAGAAGGAATCTACACTCCACTTGGTTCTTCGTCTCCGTGGTGGT 771177 Score = 161 bits (178), Expect = 1e-34 Identities = 158/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 171886 ACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCC 171945 || || || || ||||| |||||||||||||| || ||||| ||||| ||| |||| | Sbjct 771836 ACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCGGACACTATCGACAACGTCAAGAGC 771777 Query 171946 AAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAA 172005 ||||| || |||||||| ||||| || || || ||||| || | || || || || || Sbjct 771776 AAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 771717 Query 172006 CAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACAC 172065 ||||| ||||| || || |||||| | ||||||||| ||||||||||||| || || ||| Sbjct 771716 CAGCTCGAAGACGGCCGCACCCTCTCCGATTACAACATTCAAAAGGAGTCAACCCTCCAC 771657 Query 172066 CTTGTTCTAAGGCTTCGGGGTGGT 172089 || || || | || || |||||| Sbjct 771656 CTCGTCCTCCGCCTCCGTGGTGGT 771633 Score = 141 bits (156), Expect = 1e-28 Identities = 245/356 (69%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 195632 CCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATG 195691 ||||| |||||||| | ||||| | |||||||||||| || || ||| | Sbjct 880649 CCCGAGGAAATTTCCGCCATGGTCCTTGGCAAGATGAAGGAGGTCGCTGAGACTTATCTC 880708 Query 195692 GGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGA 195751 ||| | | || || | || || || ||||| || || ||||||| || | || || Sbjct 880709 GGTGAGCCAGTTAAGAACGCTGTGGTCACTGTTCCCGCCTACTTCAACGACGCCCAGCGT 880768 Query 195752 CAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAA 195811 || ||||||||||||| |||| || ||||| ||| ||| | | |||| ||| Sbjct 880769 GCCGCCACAAAGGACGCTGGAACTATCGCCGGTCTCAACGTTCTCCGTGTCGTCAACGAA 880828 Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || || || | |||||||| || ||||||| | | | | || | || Sbjct 880829 CCCACCGCCGCCGCTCTCGCTTATGGCCTTGACAAGACCGATCAGAAGGAACGCCAGGTC 880888 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGT 195931 | | | ||||||||||||||||| || ||||| || | || | |||||| | || Sbjct 880889 CTTGTATACGATCTCGGTGGTGGTACCTTCGATGTGTCCATCCTGACTATTGAGGAGGGC 880948 Query 195932 ATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||| || || |||| |||||||| |||||||| |||||||| |||||||| Sbjct 880949 GTTTTCGAGGTCCAGTCTACCGCTGGTGACACTCATCTCGGTGGTGAGGATTTCGA 881004 >seq17 Length=926260 Score = 143 bits (158), Expect = 4e-29 Identities = 562/865 (65%), Gaps = 23/865 (3%) Strand=Plus/Minus Query 77966 ATGCGTGTTTCTATTGGTATTCATGGAAATGATATTCCAGCGGTAC-TTGAAACGTATGA 78024 |||||||| || | || ||||| || ||||| || | || | | |||| ||||| || Sbjct 107372 ATGCGTGTCGCTGTCGGCATTCACGGCAATGACAT-CGAGAAGGCCATTGAGACGTACGA 107314 Query 78025 TAAAATGTC-CAATGGTATGTTTATTCACGCAACACCTACTTTGTTTAATGCAGGTACTC 78083 | ||||| || ||| |||| ||||| | || || | || || ||||| |||| Sbjct 107313 CTACATGTCACAGAAGTAC-TTTACACACGCCTCGCCGACGCTCTTCAACGCAGGCACTC 107255 Query 78084 CCCGTCCACAGATGTCATCTTGTTTCCTACTTGCAAATAAGGAGGACTCTATTAATGGTA 78143 | || |||||||| || || ||||| ||| | || |||||| ||| | |||| Sbjct 107254 CATCCCCTCAGATGTCCTCCTGCTTCCTCATTGACATGAAAGAGGACAGCATTGACGGTA 107195 Query 78144 TATACGGGACTCTCACAGAG-TGTGCTCAGATTTCTAAGTGGGCTGGTGGTATAGGTCTT 78202 | |||| || || | ||| ||||| ||| || ||| ||||| ||||| || || Sbjct 107194 TCTACGACACACTGA-AGACCTGTGCCTTGATCTCCAAGACTGCTGGCGGTATTGGCCTC 107136 Query 78203 CATATTCACGATGTTCGTGCAAACAAG-TCCAGGATTAGAGGAACTAATGGTCAGTCTGA 78261 | | || | | ||||| | || | ||| || | || || || || || | Sbjct 107135 AACGTGCATCGTATCCGTGCCA-CAGGCTCCTACATCGGTGGCACCAACGGAACTTCGAA 107077 Query 78262 TGGAATTATTCCTATGCTTAGGGTATTCAATGCTACAGCACGCTATGTCAACCAAGCGGG 78321 ||| | ||||||||||| | || | ||| |||||||| || || |||| ||| Sbjct 107076 TGGTCTCATTCCTATGCTCCGTGTCTACAACAACACAGCACGTTACGTTGACCA---GGG 107020 Query 78322 TCGTAGGAAGGG-----GT-CATTCGCTATGTACCTTGAACCTTGGCACGCCGATGTAAT 78375 | | | ||| | || | || || || || ||||| || |||||||||||||| | Sbjct 107019 TGGCAACAAGCGTCCCGGTGCCTTTGCCATCTATCTTGAGCCATGGCACGCCGATGTCTT 106960 Query 78376 -GGATTTTTTGGAACTT-CGTCTCAACCAGGGTGACGAGGAAGCTCGATGCAGGGATTTA 78433 || || ||| |||| || ||||| || | || || | || | ||| | Sbjct 106959 CGGCTTCCTTG--ACTTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCTCGTGATCTC 106902 Query 78434 TTCACTGCTATGTGGATTCCGGATCTTTTTATGAAGAGAGTTGAGGAAGGAGGTAAATGG 78493 ||| ||| ||||||| || ||||| || |||||| | || | || ||| ||||| Sbjct 106901 TTCTACGCTTTGTGGATCCCCGATCTCTTCATGAAGCGCGTCCAAGAGAATGGTGAATGG 106842 Query 78494 TCTCTTTTCTGTCCAGATAAGACTAAGGGTCTTTCAGATGTATACGGGGAAGAATTCGAA 78553 | || |||||||| || || || |||||| | ||||| ||||| || || ||||| Sbjct 106841 ACGCTGTTCTGTCCCAATGAGGCTCCTGGTCTTGCCGATGTTTACGGTGATGAGTTCGAG 106782 Query 78554 AAATTGTACACTAAATACGAAGAGGAAGGTCTCGCTATTAAGACAATTGATGCATCTGAA 78613 | | ||| ||||| |||| || | | | | || | ||| | ||| Sbjct 106781 GAGCTCTACCACCGCTACGAGAAGGAGAATCGTGGTCGTGAAACCGTCCGTGC-CCAGAA 106723 Query 78614 -CTATGGAAAGCTATTATCAAAAGTCAAACAGAGACCGGCACCCCGTATATGCTATACAA 78672 || ||| | || ||| || | || || ||||| || | ||| | ||||| ||||| Sbjct 106722 GCTTTGGTATGCCATTCTCGAGGCGCAGACCGAGACTGGTAACCCTTTCATGCTCTACAA 106663 Query 78673 AGACAGCTGTAACAGAAAGTCTAACCAAAAGAACCTAGGTGTCATCAAAAGCTCTAACCT 78732 ||| ||| ||||| ||| ||||| |||||||| ||| ||| |||||| ||||| Sbjct 106662 GGACGCCTGCAACAGGAAGAGCAACCAGAAGAACCTGGGTACTATCCGAAGCTCCAACCT 106603 Query 78733 TTGCACAGAAATTCTGGAATACACGGATAAGAATGAAACAGCTGTATGTAATCTAGGGTC 78792 ||||| || || | || ||||| | | | || ||||| || ||||| | || Sbjct 106602 CTGCACTGAGATCATCGAGTACACTGCTCCTGACGAGGTGGCTGTCTGCAATCTTGCTTC 106543 Query 78793 TATCGCTCTACCAAAGTTTGTTGAT 78817 | ||||| ||| ||||||||| Sbjct 106542 CCTTGCTCTCCCATCCTTTGTTGAT 106518 >seq15 Length=938269 Score = 125 bits (138), Expect = 9e-24 Identities = 223/326 (68%), Gaps = 6/326 (2%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 |||||||||||||| || || || | |||||| || | ||| || | || || || || Sbjct 545532 AAGATGAAGGAGACCGCCGAGTCCTACATGGGCAAGAATGTCAAGAACGCCGTCGTCACC 545591 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || || || || ||||| || ||||| |||| ||||| Sbjct 545592 GTGCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCTGGCCAGATTGCC 545651 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 ||||| ||| || | || |||| || || || || ||||| |||| || ||||| Sbjct 545652 GGTCTTAACGTCCTCCGTGTTGTCAACGAGCCCACCGCAGCTGCTCTTGCCTACGGTCTC 545711 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 | |||||| | ||||| ||| ||| ||||| ||||||||||| || Sbjct 545712 G------ACAAGGCCACCGATAACGTCGTAGCTGTCTACGATCTTGGTGGTGGTACTTTC 545765 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||| | || | ||| | || | ||| | || || || ||| |||| ||||| Sbjct 545766 GATATTTCCATCCTCGAGATCCAGTCTGGCGTCTTTGAGGTCAAGTCTACCAACGGTGAC 545825 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGA 195987 || ||||| |||||||| |||||||| Sbjct 545826 ACACATCTCGGTGGTGAGGATTTCGA 545851 >seq2 Length=2710459 Score = 111 bits (122), Expect = 2e-19 Identities = 172/245 (70%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 || || || || ||||||| || || || || || || |||||||| | |||||| Sbjct 1626086 ACCGTGCCCGCCTACTTCAACGACAACCAGCGTCAAGCCACCAAGGACGCCGGTGCTATC 1626027 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 || || || ||| ||| | || ||||| || || || || || || || ||||| ||| Sbjct 1626026 GCTGGCCTCAACGTTCTCCGTATCATCAACGAGCCTACCGCCGCCGCCATCGCTTACGGT 1625967 Query 195839 CTGGA---CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGT 195895 || | | || |||| | || | ||||| | |||| ||||||||||||||| Sbjct 1625966 CTCGGTTCCGGAAAGTCGGACAAGGAGAGGAATGTTCTCATCTACGATCTCGGTGGTGGT 1625907 Query 195896 ACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCT 195955 || || |||||||| ||||| | || | |||||| | ||| || |||||||||||| Sbjct 1625906 ACTTTCGATGTCTCTCTTCTTCACATCCAGGGTGGTGTCTTCACCGTCAAGGCTACTGCT 1625847 Query 195956 GGTGA 195960 || || Sbjct 1625846 GGAGA 1625842 >seq29 Length=430389 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| || || ||||| || || || ||||||||||||||||| ||||| || Sbjct 67329 ATGCAGATCTTCGTCAAGACCCTCACGGGTAAGACTATCACCCTCGAGGTGGAGTCTTCG 67388 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCA 171953 ||||| ||||| || | || |||||||||| Sbjct 67389 GACACCATCGACAATGTGAAGTCCAAGATTCA 67420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657861832593680