Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq4 113 1e-19
seq2 91.5 4e-13
>seq4
Length=2048726
Score = 113 bits (124), Expect = 1e-19
Identities = 158/222 (71%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| ||||||||||| || || ||||| | || || || || ||||| || ||
Sbjct 1808331 CTTGACCAAACGACGCTGGATGTATCCAGTCTCGGCAGTCTTCACGGCGGTATCGATGAG 1808390
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702
||| |||||||| |||| || |||||||| | ||| ||| ||||| | || |
Sbjct 1808391 ACCCTCACGACCAGCCATGGCGTGGAAGAAGAACTCGGATGGTGTAAGCCCACGAAGGTA 1808450
Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762
|||| |||| || || || || | ||||||||||| |||| |||||| || || || |
Sbjct 1808451 GGAGTTCTCCACAAATCCGCGGGACTCGGGCGAATAGTCGTCCTTGGTGAAATGCGGTAA 1808510
Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
|| |||| || | || ||||| || |||| ||| || ||
Sbjct 1808511 TGTTCTGTACTTGAATCCATATGGAATGCGCTGTCCTTCGAC 1808552
Score = 96.9 bits (106), Expect = 1e-14
Identities = 383/592 (65%), Gaps = 22/592 (4%)
Strand=Plus/Minus
Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGC-GTCATATAGCCG 251465
|| || ||||| ||| |||||||| || |||| ||||| || | || | | || ||
Sbjct 1398462 ATCAGGCCACAGATATCGCACACATGAACCGTGTACGCATCTGAGACCGTGAAA-AGGCG 1398404
Query 251466 ACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAA 251525
| || ||| || |||||||| | ||||||||||||||| ||||| || |||||
Sbjct 1398403 CTCTTTCAAGAAAGCAGCGGCACCGTGCGCAATCATACAATCACGTTCCATCTCTCCGAA 1398344
Query 251526 ACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGG 251585
||| |||||||| || | || | ||| || |||| ||||| || ||| | || ||
Sbjct 1398343 ACGCAGACCACCGTCTCTGGCACGACCTTCCACAGGTTGACGTGTAAGAATTTGCAGCGG 1398284
Query 251586 ACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGC 251645
|| || ||| || ||| |||| |||||||| |||||||| ||| |||
Sbjct 1398283 GCCACGGGCACGGGCGTGGATCTTGTCATCGACCATATGTCGTAGACGCTGATAGTATGT 1398224
Query 251646 GGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAA 251701
|| || | ||||| || || |||| | || || || | |||| ||||| |
Sbjct 1398223 TGGTCCCAAGAAGACTTGTGTTC----GCATCTTCTTGCCCGTGTGGCCGTTGTACATGA 1398168
Query 251702 CTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGC---TCTGAAGCAATATCACCAA 251758
||| ||| | | |||||| | | | ||| ||||| || | | | |
Sbjct 1398167 TCTCGAATCCTCTCTTCTGATAACCGGCTCTTTCGAGCAAGTCTGA---GATTTGATCGA 1398111
Query 251759 TCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATT--TGAATCAACACTTT 251816
| | || | ||| || | || || | | ||||| || || ||| ||
Sbjct 1398110 CAGTAATTTCTGTGAAAGGAGTTGCATCACCTTCTTG-GCCATTGATGGCTC-CCACCTT 1398053
Query 251817 GCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATT 251876
| | || ||| || ||||| || ||||||||| |||||||| ||||||||
Sbjct 1398052 GGAGAGTAGACACTCGACCAAATGGGCAATGGTCATACGAGACGGAATAGCGTGGGGATT 1397993
Query 251877 GATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA- 251935
|||||| | || || | || || ||| | ||| |||||||||| || | ||||
Sbjct 1397992 GATGATCAAATCCGGAGTGAGACCCTCACTGGAGAATGGCATATCCTCTT-GACGATAAG 1397934
Query 251936 TGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
|| | || || ||||| || || ||||| || || |||||| ||||||||
Sbjct 1397933 TGATACCGATGGTTCCTTTCTGACCGTGGCGGGACGCGAACTTGTCACCAAT 1397882
Score = 96.9 bits (106), Expect = 1e-14
Identities = 110/147 (75%), Gaps = 3/147 (2%)
Strand=Plus/Plus
Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872
|||||||| | | ||| || |||||| | || ||||| |||||||| ||||| |||
Sbjct 1807537 AGAATTTCCTTGAGACGTGGCACACCAAGCGTAACGTT---CTTGGACGAGACACCGGCA 1807593
Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932
|| ||||| ||||| || || | || || | ||||||||||||| || || |||| |
Sbjct 1807594 AAATGGAAGGTATTGAGTGTCATCTGCGTGGCTGGCTCACCAATAGACTGGGCAGCAAGC 1807653
Query 301933 ATACCAACCATTTCTCCTGGTGCTACA 301959
| ||||||||| || || || || |||
Sbjct 1807654 ACACCAACCATCTCGCCCGGAGCCACA 1807680
>seq2
Length=2710459
Score = 91.5 bits (100), Expect = 4e-13
Identities = 144/204 (71%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533
||||| | ||||| || | || ||||| |||||| ||||||||||| || | ||| ||||
Sbjct 1167980 GAAGCTGCGATGCTCCATATGCAATCAGACAATCGCGCTCCATTTCTCCCAGACGCAGAC 1167921
Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG 251593
|||| || | || | ||||| | |||||| || || ||| | | |||||| |
Sbjct 1167920 CACCGTCCCTTGCTCGTCCCTCAGTAGGCTGGCGCGTCAGAATTGCGCGAGGACCACGAG 1167861
Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653
|||||| || ||| || | ||||| ||||| || | ||||||| | || ||||
Sbjct 1167860 CGCGGCTGTGCATCTTGTCCTGCACCATGTGCTTCAGTCTCTGGTAGTAGATTGGGCCGA 1167801
Query 251654 TGAAGATGCTCGAAGGCATTTGCT 251677
|||| || | ||| ||| ||||
Sbjct 1167800 AGAAGGTG-TAAAAGACATGTGCT 1167778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471816298821253
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |