Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 113 1e-19 seq2 91.5 4e-13 >seq4 Length=2048726 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| ||||||||||| || || ||||| | || || || || ||||| || || Sbjct 1808331 CTTGACCAAACGACGCTGGATGTATCCAGTCTCGGCAGTCTTCACGGCGGTATCGATGAG 1808390 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAA 302702 ||| |||||||| |||| || |||||||| | ||| ||| ||||| | || | Sbjct 1808391 ACCCTCACGACCAGCCATGGCGTGGAAGAAGAACTCGGATGGTGTAAGCCCACGAAGGTA 1808450 Query 302703 GGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAG 302762 |||| |||| || || || || | ||||||||||| |||| |||||| || || || | Sbjct 1808451 GGAGTTCTCCACAAATCCGCGGGACTCGGGCGAATAGTCGTCCTTGGTGAAATGCGGTAA 1808510 Query 302763 GGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 || |||| || | || ||||| || |||| ||| || || Sbjct 1808511 TGTTCTGTACTTGAATCCATATGGAATGCGCTGTCCTTCGAC 1808552 Score = 96.9 bits (106), Expect = 1e-14 Identities = 383/592 (65%), Gaps = 22/592 (4%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGC-GTCATATAGCCG 251465 || || ||||| ||| |||||||| || |||| ||||| || | || | | || || Sbjct 1398462 ATCAGGCCACAGATATCGCACACATGAACCGTGTACGCATCTGAGACCGTGAAA-AGGCG 1398404 Query 251466 ACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAA 251525 | || ||| || |||||||| | ||||||||||||||| ||||| || ||||| Sbjct 1398403 CTCTTTCAAGAAAGCAGCGGCACCGTGCGCAATCATACAATCACGTTCCATCTCTCCGAA 1398344 Query 251526 ACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGG 251585 ||| |||||||| || | || | ||| || |||| ||||| || ||| | || || Sbjct 1398343 ACGCAGACCACCGTCTCTGGCACGACCTTCCACAGGTTGACGTGTAAGAATTTGCAGCGG 1398284 Query 251586 ACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGC 251645 || || ||| || ||| |||| |||||||| |||||||| ||| ||| Sbjct 1398283 GCCACGGGCACGGGCGTGGATCTTGTCATCGACCATATGTCGTAGACGCTGATAGTATGT 1398224 Query 251646 GGGACCGATGAAGA----TGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACATAA 251701 || || | ||||| || || |||| | || || || | |||| ||||| | Sbjct 1398223 TGGTCCCAAGAAGACTTGTGTTC----GCATCTTCTTGCCCGTGTGGCCGTTGTACATGA 1398168 Query 251702 CTTCGTTTCCATTAGATTCATAACCAAGTTTCTGTAGC---TCTGAAGCAATATCACCAA 251758 ||| ||| | | |||||| | | | ||| ||||| || | | | | Sbjct 1398167 TCTCGAATCCTCTCTTCTGATAACCGGCTCTTTCGAGCAAGTCTGA---GATTTGATCGA 1398111 Query 251759 TCTTGAATTTGCTAAAACTGGTGCCGTCTCCGTAAAGACCCATT--TGAATCAACACTTT 251816 | | || | ||| || | || || | | ||||| || || ||| || Sbjct 1398110 CAGTAATTTCTGTGAAAGGAGTTGCATCACCTTCTTG-GCCATTGATGGCTC-CCACCTT 1398053 Query 251817 GCCTAAAAGTGTCTCTTTCAGTTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATT 251876 | | || ||| || ||||| || ||||||||| |||||||| |||||||| Sbjct 1398052 GGAGAGTAGACACTCGACCAAATGGGCAATGGTCATACGAGACGGAATAGCGTGGGGATT 1397993 Query 251877 GATGATGATGTCGGGTTTCAGTCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA- 251935 |||||| | || || | || || ||| | ||| |||||||||| || | |||| Sbjct 1397992 GATGATCAAATCCGGAGTGAGACCCTCACTGGAGAATGGCATATCCTCTT-GACGATAAG 1397934 Query 251936 TGTTTCCAATAGTTCCCTTTTGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || | || || ||||| || || ||||| || || |||||| |||||||| Sbjct 1397933 TGATACCGATGGTTCCTTTCTGACCGTGGCGGGACGCGAACTTGTCACCAAT 1397882 Score = 96.9 bits (106), Expect = 1e-14 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| ||||| ||| Sbjct 1807537 AGAATTTCCTTGAGACGTGGCACACCAAGCGTAACGTT---CTTGGACGAGACACCGGCA 1807593 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || ||||| ||||| || || | || || | ||||||||||||| || || |||| | Sbjct 1807594 AAATGGAAGGTATTGAGTGTCATCTGCGTGGCTGGCTCACCAATAGACTGGGCAGCAAGC 1807653 Query 301933 ATACCAACCATTTCTCCTGGTGCTACA 301959 | ||||||||| || || || || ||| Sbjct 1807654 ACACCAACCATCTCGCCCGGAGCCACA 1807680 >seq2 Length=2710459 Score = 91.5 bits (100), Expect = 4e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| | ||||| || | || ||||| |||||| ||||||||||| || | ||| |||| Sbjct 1167980 GAAGCTGCGATGCTCCATATGCAATCAGACAATCGCGCTCCATTTCTCCCAGACGCAGAC 1167921 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG 251593 |||| || | || | ||||| | |||||| || || ||| | | |||||| | Sbjct 1167920 CACCGTCCCTTGCTCGTCCCTCAGTAGGCTGGCGCGTCAGAATTGCGCGAGGACCACGAG 1167861 Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGA 251653 |||||| || ||| || | ||||| ||||| || | ||||||| | || |||| Sbjct 1167860 CGCGGCTGTGCATCTTGTCCTGCACCATGTGCTTCAGTCTCTGGTAGTAGATTGGGCCGA 1167801 Query 251654 TGAAGATGCTCGAAGGCATTTGCT 251677 |||| || | ||| ||| |||| Sbjct 1167800 AGAAGGTG-TAAAAGACATGTGCT 1167778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816298821253