Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq18 129 7e-24 seq17 127 2e-23 seq8 127 2e-23 seq2 102 1e-15 seq24 100 3e-15 >seq18 Length=888533 Score = 129 bits (142), Expect = 7e-24 Identities = 181/253 (72%), Gaps = 1/253 (0%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| | |||||||| Sbjct 234334 GCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCTAGCGAGATG 234393 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | |||||| ||| | ||||| | | Sbjct 234394 TTCTCCATGAAGTCGAAGGGGTTGGTGGCATTGTAGACCTTGGTGTTGCCGAGAGCCAAC 234453 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 |||||||| ||||| || ||||| |||||||||||||| ||| ||||||||| || | Sbjct 234454 AGCAGGCGATCGGCAACGAACTCAATGTACTGGCACATAAGGGTGGCGTTCATACCAAGA 234513 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || || || | |||||||| ||||||| ||| || ||| ||||| |||| Sbjct 234514 AGTGCGCAGGGGAGAGCCTCGCTCAAGAACTCTTGCTCAATTGTGACAGCCTCAGTGATG 234573 Query 868931 ATCTGCCTGGGCA 868943 || |||||| || Sbjct 234574 AT-GGCCTGGACA 234585 Score = 93.3 bits (102), Expect = 5e-13 Identities = 115/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 869169 CACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGA 869228 || ||||| ||| |||||||| ||| | |||||| || | || || ||||| | Sbjct 234638 CAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGACCTGGCATCA 234697 Query 869229 GGCCGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCG 869287 | || |||||||||||||||||||||| |||| || ||| ||| ||||||||||| Sbjct 234698 GACCACGCTTCTTGAGCCAAAAGATGGACGCA-AAGGAGCCGCTGAAGAAGATGCCCTCC 234756 Query 869288 ACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGT 869322 ||||| ||||| ||| ||| || | ||| || || Sbjct 234757 ACGGCAGCAAATGCGACGAGACGGTTGGCGAAAGT 234791 >seq17 Length=926260 Score = 127 bits (140), Expect = 2e-23 Identities = 208/300 (69%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| || || |||| ||| |||| |||||||| || | ||| || || || Sbjct 107022 CTGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGACCATTCGA 107081 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| | | ||||| ||| | ||| || | ||| || | ||| Sbjct 107082 AGTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCACGTTGAGGCC 107141 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | ||||||||| | || || || || ||||||||||| || || Sbjct 107142 AATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGATACCGTC 107201 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| | |||||||| | ||| ||||| || || | || ||| | ||||| Sbjct 107202 AATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGATGGAGTGCC 107261 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 |||||||||||||| |||| || || || ||| | | |||||| |||||| || Sbjct 107262 TGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACATGTAGTCGTACGT 107321 Score = 91.5 bits (100), Expect = 2e-12 Identities = 104/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCG--TCGTACCCAGGTTCTGCTGGTT 1628219 ||| || |||||| ||||| ||||||| | ||| | ||||||||||||| |||||| Sbjct 106583 ACTCGATGATCTCAGTGCAGAGGTTGGAG--CTTCGGATAGTACCCAGGTTCTTCTGGTT 106640 Query 1628220 GGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGC 1628279 | | || |||| ||||||||||| ||||||| | || || |||||| ||||||| Sbjct 106641 GCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGCGC 106700 Query 1628280 CGCGACGATGGCCGACCA 1628297 | ||| ||||| |||| Sbjct 106701 CTCGAGAATGGCATACCA 106718 >seq8 Length=1622497 Score = 127 bits (140), Expect = 2e-23 Identities = 97/115 (84%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || ||||||||||||||||||||| | || ||||| | || |||||| | || |||||| Sbjct 352270 GCTGCCAACTACCTCGACATCAAGGCGCTCCTCGACGTCGGCTGCAAGACCGTTGCCAAC 352211 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| ||||| ||||||||||| || || |||||| || ||| Sbjct 352210 ATGATCAAGGGCAAGTCACCCGACGAGATCCGCAAAACATTCAACATCCAGAACG 352156 >seq2 Length=2710459 Score = 102 bits (112), Expect = 1e-15 Identities = 199/294 (68%), Gaps = 0/294 (0%) Strand=Plus/Plus Query 1573968 GAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATC 1574027 || || || ||||| |||||||| || |||||||||||| |||||||||||||||| | Sbjct 50192 GAAGCAGTCCTCGAGCTCAACGCCTCCGACGAGCGCGGCATCGACGTCGTGCGCAACCGC 50251 Query 1574028 ATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATC 1574087 |||||| |||| |||| || ||||||||| || | || ||| || |||| Sbjct 50252 ATCAAGGGATTCGCCCAGAAGAAAGTCACCCTGCCGCCAGGCAGGCAGAAGCTGGTCATT 50311 Query 1574088 CTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAA 1574147 || || ||||| ||| || | ||| | || || |||||||| | || ||||| Sbjct 50312 CTGGATGAGGCGGACAGCATGACGAGTGGAGCTCAACAGGCCCTAAGAAGAACAATGGAG 50371 Query 1574148 AAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAG 1574207 | ||| || || || ||||| | || |||||| |||| | |||| ||| Sbjct 50372 ATCTACAGTGCAACCACACGATTTGCTTTTGCCTGCAACCAGTCGAACAAAATCATTGAG 50431 Query 1574208 GCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGCCTGGGTGACGCCCAG 1574261 |||| ||| || || || || || |||| | ||||| || |||||| Sbjct 50432 CCCCTGCAATCCCGATGTGCAATCCTACGCTACGCACGCCTCACCGATGCCCAG 50485 >seq24 Length=653432 Score = 100 bits (110), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 1852034 TCGTCGAGGCCG---ATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTG 1852090 ||||||||| || ||||||||| ||| || || |||||||| |||| || | Sbjct 212702 TCGTCGAGGACGTCGATCTTGGAGTCGGGGTCCGAGGAACTCATCTTTCCGCCCTGG--- 212758 Query 1852091 AGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGG 1852150 || || || || | ||||| | || || ||||| | ||||| | |||||| Sbjct 212759 AGACCGGGGACCATAGGGTTCATCAAATGTGCGCGCTCCTTGTAGCCAATCTTGGGCAGG 212818 Query 1852151 TGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACG 1852210 || || | || || ||||||||||| ||| |||||||| ||| | ||||| Sbjct 212819 ACATCCTTTGCCAGAGCGAAAATCTTGCGCTGATCGACACCGCCAAATTGGACATCGACA 212878 Query 1852211 TCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250 ||||||| |||||| || || ||||||||||||||||||| Sbjct 212879 TCGAGGTACTGCTCATCAAGTGCCTGCATGAGCGGGTAGA 212918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107133537536873