Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq18 129 7e-24
seq17 127 2e-23
seq8 127 2e-23
seq2 102 1e-15
seq24 100 3e-15
>seq18
Length=888533
Score = 129 bits (142), Expect = 7e-24
Identities = 181/253 (72%), Gaps = 1/253 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| | ||||||||
Sbjct 234334 GCCTTCTGGTAATCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCTAGCGAGATG 234393
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | |||||| ||| | ||||| | |
Sbjct 234394 TTCTCCATGAAGTCGAAGGGGTTGGTGGCATTGTAGACCTTGGTGTTGCCGAGAGCCAAC 234453
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|||||||| ||||| || ||||| |||||||||||||| ||| ||||||||| || |
Sbjct 234454 AGCAGGCGATCGGCAACGAACTCAATGTACTGGCACATAAGGGTGGCGTTCATACCAAGA 234513
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | |||||||| ||||||| ||| || ||| ||||| ||||
Sbjct 234514 AGTGCGCAGGGGAGAGCCTCGCTCAAGAACTCTTGCTCAATTGTGACAGCCTCAGTGATG 234573
Query 868931 ATCTGCCTGGGCA 868943
|| |||||| ||
Sbjct 234574 AT-GGCCTGGACA 234585
Score = 93.3 bits (102), Expect = 5e-13
Identities = 115/155 (74%), Gaps = 2/155 (1%)
Strand=Plus/Plus
Query 869169 CACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGA 869228
|| ||||| ||| |||||||| ||| | |||||| || | || || ||||| |
Sbjct 234638 CAGTATGCATACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAATGTCAGACCTGGCATCA 234697
Query 869229 GGCCGCGCTTCTTGAGCCAAAAGATGG-CGCAGAAACTGCCCGAGAAAAAGATGCCCTCG 869287
| || |||||||||||||||||||||| |||| || ||| ||| |||||||||||
Sbjct 234698 GACCACGCTTCTTGAGCCAAAAGATGGACGCA-AAGGAGCCGCTGAAGAAGATGCCCTCC 234756
Query 869288 ACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGT 869322
||||| ||||| ||| ||| || | ||| || ||
Sbjct 234757 ACGGCAGCAAATGCGACGAGACGGTTGGCGAAAGT 234791
>seq17
Length=926260
Score = 127 bits (140), Expect = 2e-23
Identities = 208/300 (69%), Gaps = 0/300 (0%)
Strand=Plus/Plus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||| ||||| || || |||| ||| |||| |||||||| || | ||| || || ||
Sbjct 107022 CTGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGACCATTCGA 107081
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||||| | | ||||| ||| | ||| || | ||| || | |||
Sbjct 107082 AGTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCACGTTGAGGCC 107141
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| ||||| || | ||||||||| | || || || || ||||||||||| || ||
Sbjct 107142 AATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAGATACCGTC 107201
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| | |||||||| | ||| ||||| || || | || ||| | |||||
Sbjct 107202 AATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGATGGAGTGCC 107261
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|||||||||||||| |||| || || || ||| | | |||||| |||||| ||
Sbjct 107262 TGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACATGTAGTCGTACGT 107321
Score = 91.5 bits (100), Expect = 2e-12
Identities = 104/138 (75%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCG--TCGTACCCAGGTTCTGCTGGTT 1628219
||| || |||||| ||||| ||||||| | ||| | ||||||||||||| ||||||
Sbjct 106583 ACTCGATGATCTCAGTGCAGAGGTTGGAG--CTTCGGATAGTACCCAGGTTCTTCTGGTT 106640
Query 1628220 GGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGC 1628279
| | || |||| ||||||||||| ||||||| | || || |||||| |||||||
Sbjct 106641 GCTCTTCCTGTTGCAGGCGTCCTTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGCGC 106700
Query 1628280 CGCGACGATGGCCGACCA 1628297
| ||| ||||| ||||
Sbjct 106701 CTCGAGAATGGCATACCA 106718
>seq8
Length=1622497
Score = 127 bits (140), Expect = 2e-23
Identities = 97/115 (84%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| ||||||||||||||||||||| | || ||||| | || |||||| | || ||||||
Sbjct 352270 GCTGCCAACTACCTCGACATCAAGGCGCTCCTCGACGTCGGCTGCAAGACCGTTGCCAAC 352211
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||||||| ||||| ||||||||||| || || |||||| || |||
Sbjct 352210 ATGATCAAGGGCAAGTCACCCGACGAGATCCGCAAAACATTCAACATCCAGAACG 352156
>seq2
Length=2710459
Score = 102 bits (112), Expect = 1e-15
Identities = 199/294 (68%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 1573968 GAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGTCGTGCGCAAGATC 1574027
|| || || ||||| |||||||| || |||||||||||| |||||||||||||||| |
Sbjct 50192 GAAGCAGTCCTCGAGCTCAACGCCTCCGACGAGCGCGGCATCGACGTCGTGCGCAACCGC 50251
Query 1574028 ATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATC 1574087
|||||| |||| |||| || ||||||||| || | || ||| || ||||
Sbjct 50252 ATCAAGGGATTCGCCCAGAAGAAAGTCACCCTGCCGCCAGGCAGGCAGAAGCTGGTCATT 50311
Query 1574088 CTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAA 1574147
|| || ||||| ||| || | ||| | || || |||||||| | || |||||
Sbjct 50312 CTGGATGAGGCGGACAGCATGACGAGTGGAGCTCAACAGGCCCTAAGAAGAACAATGGAG 50371
Query 1574148 AAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAG 1574207
| ||| || || || ||||| | || |||||| |||| | |||| |||
Sbjct 50372 ATCTACAGTGCAACCACACGATTTGCTTTTGCCTGCAACCAGTCGAACAAAATCATTGAG 50431
Query 1574208 GCCCTCCAAAGTCGCTGCGCCATTCTGCGCTTTGTGCGCCTGGGTGACGCCCAG 1574261
|||| ||| || || || || || |||| | ||||| || ||||||
Sbjct 50432 CCCCTGCAATCCCGATGTGCAATCCTACGCTACGCACGCCTCACCGATGCCCAG 50485
>seq24
Length=653432
Score = 100 bits (110), Expect = 3e-15
Identities = 155/220 (70%), Gaps = 6/220 (3%)
Strand=Plus/Plus
Query 1852034 TCGTCGAGGCCG---ATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTG 1852090
||||||||| || ||||||||| ||| || || |||||||| |||| || |
Sbjct 212702 TCGTCGAGGACGTCGATCTTGGAGTCGGGGTCCGAGGAACTCATCTTTCCGCCCTGG--- 212758
Query 1852091 AGGCCCGGCACGAGCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGG 1852150
|| || || || | ||||| | || || ||||| | ||||| | ||||||
Sbjct 212759 AGACCGGGGACCATAGGGTTCATCAAATGTGCGCGCTCCTTGTAGCCAATCTTGGGCAGG 212818
Query 1852151 TGGTCGCGCGCAAAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACG 1852210
|| || | || || ||||||||||| ||| |||||||| ||| | |||||
Sbjct 212819 ACATCCTTTGCCAGAGCGAAAATCTTGCGCTGATCGACACCGCCAAATTGGACATCGACA 212878
Query 1852211 TCGAGGTGCTGCTCGTCGAGGGCCTGCATGAGCGGGTAGA 1852250
||||||| |||||| || || |||||||||||||||||||
Sbjct 212879 TCGAGGTACTGCTCATCAAGTGCCTGCATGAGCGGGTAGA 212918
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107133537536873
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |