Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq17 174 1e-38 seq6 102 7e-17 >seq17 Length=926260 Score = 174 bits (192), Expect = 1e-38 Identities = 1009/1596 (63%), Gaps = 50/1596 (3%) Strand=Plus/Plus Query 138433 GCAATGATGCGATTTCTCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATC 138492 |||||||| ||||| |||||| || ||||| || | || || || || | | Sbjct 105901 GCAATGATACGATTCTTCATGTTCTCAGACCACAGACCCATATCGACCAGATCCTTAAGC 105960 Query 138493 AGATATCTGTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTG 138552 || || ||| | ||| || || ||||| || | || || || ||| ||||| Sbjct 105961 AGCCATGGGTTGACGACTTGGAACTCACCAGCGAGCACACGGCGGGAGTAGATGTTCGAT 106020 Query 138553 GTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATG 138612 ||| | |||||||| | ||||||||||| || ||||||| || | || || |||||| Sbjct 106021 GTGTATGGCTCAAAGCACTCGTTGTTTCCGAGGATCTGAGAGGTAGATGCAGTTGGCATG 106080 Query 138613 TACGCCACCAAAAGAGAATTCCGTAAACCGTGA--AGCTTGATTCGTTCCTTGAGCGACG 138670 || | ||||||||| || || | ||| || ||| ||| ||||| || || | Sbjct 106081 GGTGCAATCAAAAGAGAGTTGCGAACACCATGCTGAGCAATCTTC--TCCTTCAGGGAGG 106138 Query 138671 ACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCC---- 138726 ||||||||||| ||| |||| | |||||||| |||||||| | || ||| Sbjct 106139 CCCAGTCCCACAGATCAGTAGGAGTCACATTCCACATGTCGTACTGAAGAATACCCTGAG 106198 Query 138727 AAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTG 138786 | ||| ||| || ||||| | | |||| || | || | || | || Sbjct 106199 ACACTGGCGAA----CCCTCGTAGGTCTGGTATGGGCCGAGTTCCTTGGCGATGTCACAA 106254 Query 138787 CTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCC 138846 | ||| || | | ||| || |||||| ||||| |||||| |||| Sbjct 106255 GATGAAGTGAGGGCGGCGTGGTAGATGGTTTCGAAGATCTGGATGTTGAGCTTCTTGGCC 106314 Query 138847 TC-GGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCC 138905 || |||| |||| | |||| ||| || | ||| || || || || ||||| || || Sbjct 106315 TCTGGCGA-CTCGAAGGGCAAGCGCAGAGCCAGGAAAGCATCAGCAAGACCTTGGACACC 106373 Query 138906 CACTCCGACAGGGCGATGGCGCAGATTTGACGCTTT-TGCGGCTTCGATAGGATAATAGT 138964 || || | ||| | ||||| | | ||| || ||| | |||| || || | || Sbjct 106374 CATGCCAATAGGCCTGTGGCGGA-AGTTGCTGCGACGTGCCTCCTCGACTGGGTAGTGGT 106432 Query 138965 TTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTT 139024 | || |||||||| ||||| ||||| || ||| |||| || | | | || | || Sbjct 106433 TGACCTCGATGATCTTGTTCAAATTGCGAGTGACAACCTGGGTGACCT-CGTGAAGCTTT 106491 Query 139025 CAAAA-TCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATC 139083 || ||| | ||| | |||| || || | | || || || | || Sbjct 106492 TGGAAGTCGAACTCGCCACGCTTGTAATCAACAAAG--GA------TGG-GAGAGCAAGG 106542 Query 139084 GAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACAC 139143 || || | ||||| || ||||| ||||| || | |||| |||| || || | || Sbjct 106543 GAAGCAAGATTGCAGACAGCCACCTCGTCAGGAGCAGTGTACTCGATGATCTCAGTGCAG 106602 Query 139144 AAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCT 139203 | || | ||| ||||| | || | || ||||| || | ||| || || || Sbjct 106603 AGGTTGGAGCTTCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCGTCC 106662 Query 139204 TTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAG 139263 ||||| ||||| | || | ||||| || || | ||| | |||| | | | Sbjct 106663 TTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGCGCCTCGAGAATGGCATACCAAAGC 106722 Query 139264 TCCCTAGCTTGTA---TTTGACG--CACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGA 139318 | | || | | ||| ||| |||| ||| || |||||| | ||||| Sbjct 106723 TTCTGGGCACGGACGGTTTCACGACCACGA----TTC-TCCTTCTCGTAGCGGTGGTAGA 106777 Query 139319 GTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGA 139378 | || ||||| |||||||| | || | |||| | || || | ||||| | | Sbjct 106778 GCTCCTCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACA 106837 Query 139379 GCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGA 139438 ||| |||| | || ||| | | ||||||| ||||||| ||||| || |||||||||||| Sbjct 106838 GCGTCCATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGT 106897 Query 139439 ACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAAT 139498 | | | ||| || || |||||| || ||| || || |||||| Sbjct 106898 AGAAGAGATCACGAGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGC 106957 Query 139499 CAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGTTTG---C 139555 | || || || ||||||||||| || ||||||||||| | || || || ||| | Sbjct 106958 CGAAGACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTTGTTGC 107017 Query 139556 CACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGC 139615 |||| || || |||| ||| | | || ||| | || || | ||| || ||||| Sbjct 107018 CACCCTGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGACCAT 107077 Query 139616 TCGCTGTTCCGTTGGTGCTACGGATG--GGA--CTGTTGCGAGCTCGGACGTCATGTACA 139671 ||| ||||||||||||| || |||| ||| |||| || |||| ||| || Sbjct 107078 TCGAAGTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCA----CGGATACGATGCACG 107133 Query 139672 TTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGTAATGTCTCGTAT 139731 |||| ||| || ||||| || ||||| || || | || | ||| ||||| Sbjct 107134 TTGAGGCCAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTAG 107193 Query 139732 ATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGT 139791 ||||| |||||||| || | ||| | || ||||| || || | || || | Sbjct 107194 ATACCGTCAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGAT 107253 Query 139792 TTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC-ATTTGTTTCGACATCAA 139850 ||||| || || || || || ||||| || || | || | | ||||| | Sbjct 107254 GGAGTGCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGT-GACATGTA 107312 Query 139851 TTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCAT 139910 |||||||| || ||||| || | || || | ||||| || ||||||| ||| ||||| Sbjct 107313 GTCGTACGTCTCAATGGCCTTCTCGATGTCATTGCCGTGAATGCCGACAGCGACACGCAT 107372 Query 139911 CAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTC 139970 |||||| ||||| || ||||| ||| ||| | ||| || || | ||| Sbjct 107373 CAGCATGTGTTGTGGACGCTCGGCAACCTTGCCGTTGATGCGGAGGAGGTATGAGCGCTC 107432 Query 139971 TAGGGTCTTGTAGCCAAAGTACCTATAGTTGAAATC 140006 ||||||||| |||| ||| || |||||||| || Sbjct 107433 GAGGGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTC 107468 >seq6 Length=1708680 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || ||||| || ||| | | Sbjct 771404 ATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTCGAATCGTCA 771345 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | ||||| || ||||||||||| || || || || || ||||| Sbjct 771344 GATACCATTGATAACGTAAAGAGCAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 771285 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| || || || ||||| ||||| | | | || || || ||| Sbjct 771284 CAGCGCTTGATCTTCGCAGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAAC 771225 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| ||||| |||||||| Sbjct 771224 ATTCAGAAGGAATCTACACTCCACTTGGT 771196 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || ||||| || || || | || || || | | Sbjct 771632 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 771573 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| || || || || || ||||| || || Sbjct 771572 GATACTATCGACAATGTCAAGAGCAAGATCCAGGATAAGGAGGGCATTCCTCCTGACCAG 771513 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || |||||||| || || || ||||| |||||| | | | | |||| || || ||| Sbjct 771512 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGCACCCTGTCGGACTACAAC 771453 Query 24884 ATTCAAAAGGAATCGACACTACA 24906 || || ||||||||||| || || Sbjct 771452 ATCCAGAAGGAATCGACCCTCCA 771430 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | ||||| || || || || || || || || | | Sbjct 771176 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACAATCACTCTAGAGGTTGAGTCGTCT 771117 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| ||||| ||||| || || || || ||||||||||| Sbjct 771116 GACACCATCGACAACGTAAAGAGCAAGATTCAAGATAAGGAGGGCATCCCTCCCGATCAG 771057 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || | ||||| || || |||||||| ||||| | | | || || || || Sbjct 771056 CAGCGCCTTATCTTCGCGGGTAAACAGCTCGAGGACGGTCGCACTCTTTCGGACTACAAT 770997 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || |||||||| || || || ||||||||| | || |||| || || Sbjct 770996 ATCCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGCGG 770950 Score = 86.0 bits (94), Expect = 6e-12 Identities = 127/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || || || || |||||||| || || || | ||||| | || | || || Sbjct 771836 ACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCGGACACTATCGACAACGTCAAGAGC 771777 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| || || || || || ||||| || || || || |||||||| ||||| || Sbjct 771776 AAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 771717 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 ||||| || || | | | | || ||||| |||||||||||||| || || || ||| Sbjct 771716 CAGCTCGAAGACGGCCGCACCCTCTCCGATTACAACATTCAAAAGGAGTCAACCCTCCAC 771657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897211963320