Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq17 205 9e-48 >seq17 Length=926260 Score = 205 bits (226), Expect = 9e-48 Identities = 628/960 (65%), Gaps = 31/960 (3%) Strand=Plus/Plus Query 147466 GACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCAC 147525 || || ||||||||||| ||| ||| || | | |||||| | ||| || | ||| Sbjct 106543 GAAGCAAGATTGCAGACAGCCACCTCGTCAGGAGCAGTGTACTCGATGATCTCAGTGCAG 106602 Query 147526 AGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCT 147585 |||||| || | || |||| || | ||| ||||| |||| ||||| ||||| Sbjct 106603 AGGTTGGAGCTTCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCGTCC 106662 Query 147586 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGC 147642 ||| |||||||| | || || |||||| |||| || | || | ||| | || Sbjct 106663 TTGTAGAGCATGAAAGGGTTACCAGTCTCGGTCTGCGCCTCGAGAATGGCATACCAAAGC 106722 Query 147643 AGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAAC 147702 | ||| || || || | ||| || ||| || ||||| || | ||| | | Sbjct 106723 ---TTCTGGGCACGGACGGTTTCACGACCACGATTCTCCTTCTCGTAGCGGTGGTAGAGC 106779 Query 147703 CGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGC 147762 ||| ||||| || ||||| ||||||||| || ||| || || ||||| | |||| Sbjct 106780 TCCTCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACAGC 106839 Query 147763 GACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTAC 147822 | ||| | | | | | ||||| ||| || ||||| || | ||||| ||||| Sbjct 106840 GTCCATTCACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGTAG 106899 Query 147823 ATAAGATC----GCGCG---CTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAG 147875 | ||||| ||||| || | |||| | || | ||||| ||| | ||| Sbjct 106900 AAGAGATCACGAGCGCGGACCTCT----TCCTTGCCGTGGTTCTTGCG---CAAGTCAAG 106952 Query 147876 CACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTT 147935 | || ||| ||||||||||| || |||| |||| ||| | ||||| |||||| Sbjct 106953 GAAGCCGAAGACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACCGGGACGCTT 107012 Query 147936 T---CCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAG 147992 || |||||||| || | || | ||||||| | || || | ||| || || Sbjct 107013 GTTGCCACCCTGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAG 107072 Query 147993 GCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCA 148051 || ||| ||| ||||||||| | ||| | | ||| ||| || | | || |||| Sbjct 107073 ACCATTCGAAGTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGA-TACGATGCA 107131 Query 148052 CGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCG 148108 |||| | |||||| ||||| || || ||| || || || ||| | | || ||| Sbjct 107132 CGTTGAGGCCAATACCGCCAGCAGT-CTTGGAGAT--CAAGGCACAGGTCTTCAGTGTGT 107188 Query 148109 TGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCG 148168 |||||| ||||| |||||||| | ||| | | ||| | || || || |||| || | Sbjct 107189 CGTAGATACCGTCAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAG 107248 Query 148169 GAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCA 148228 | | || || || ||| || || || ||||| ||||| | || || || Sbjct 107249 GGGATGGAGTGCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACA 107308 Query 148229 TCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGC 148288 | | ||||||||||| || | |||||||| | |||||||||||| | ||||| | Sbjct 107309 TGTAGTCGTACGTCTCAATGGCCTTCTCGATGTCATTGCCGTGAATGCCGACAGCGACAC 107368 Query 148289 GCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCAT 148348 |||| |||||||| ||||| || |||||||| | |||||| ||| || ||| Sbjct 107369 GCATCAGCATGTGTTGTGGACGCTCGGCAACCTTGCCGTTGATGCGGAGGAGGTATGAGC 107428 Query 148349 TTTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGCCG 148408 |||||||| ||| | || ||| ||| ||| | || || | ||||| ||||||||| Sbjct 107429 GCTCGAGGGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCACGGTCGTAGACGATGGCCG 107488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610788922840