Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18 136 6e-26 seq2 114 2e-19 seq17 95.1 2e-13 >seq18 Length=888533 Score = 136 bits (150), Expect = 6e-26 Identities = 207/289 (72%), Gaps = 7/289 (2%) Strand=Plus/Minus Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838 ||| |||||||| || ||||||||||| ||||| ||||| || ||||| | || || Sbjct 235229 TGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAAATTGATCTTTC 235171 Query 1455839 CGCCGA-CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAGC 1455894 | || | | | ||||| || ||| ||||||||||||| |||||| | Sbjct 235170 CAAGGATCTCCATG-ACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCTCCC 235112 Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954 ||||||||||||| || ||| ||| ||| ||||| || ||||||||| | || ||| Sbjct 235111 ACGTCCTCGCCTTCTT-CGCTGCCTCCGACGGCATTGTCAACGAGAACCTCGTCGAGCGC 235053 Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014 ||| || || ||| | || |||||||| | || ||||| ||||||||| || Sbjct 235052 TTTTCCGGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAGATCATGATG 234993 Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063 || ||||||||||| || || || || || || |||||||| ||| ||| Sbjct 234992 GAGAACATCCACTCCGAGACATATTCTCTGCTCATCGACACATACATCA 234944 Score = 111 bits (122), Expect = 2e-18 Identities = 183/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582 |||||| ||||| ||| || ||| ||||||| | |||||| | || || || Sbjct 234575 ATCATCACTGAGGCTGTCACAATTGAGCAAGAGTTCTTGAGCGAGGCTCTCCCCTGCGCA 234516 Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642 || | || |||||||||||| || ||||||||||||||||| || || ||||| |||| Sbjct 234515 CTTCTTGGTATGAACGCCACC-CTTATGTGCCAGTACATTGAGTTC-GTTGCCGATCGCC 234458 Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702 |||| ||| |||||| | ||| |||| | ||||||| ||| | ||| Sbjct 234457 TGCTGTTGGCTCTCGGCAACACC-AAGGTCTACAATGCCACCAACCCCTTCGACTTCATG 234399 Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761 ||| |||||||| | |||||||||||||| |||||| || | ||| || ||| Sbjct 234398 GAGAACATCTCGCTAGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACCAG 234339 Query 1456762 AAGGCCGGCGTCACCGCCA 1456780 ||||| || |||| |||| Sbjct 234338 AAGGCTGGTGTCATGGCCA 234320 >seq2 Length=2710459 Score = 114 bits (126), Expect = 2e-19 Identities = 312/478 (65%), Gaps = 0/478 (0%) Strand=Plus/Minus Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911 ||||| || |||||||| | |||| ||||| ||||| ||| ||||||| ||| ||| Sbjct 50484 TGGGCATCGGTGAGGCGTGCGTAGCGTAGGATTGCACATCGGGATTGCAGGGGCTCAATG 50425 Query 332912 ACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATG 332971 | | |||| ||||||||| | ||||| || || || | | | ||||| Sbjct 50424 ATTTTGTTCGACTGGTTGCAGGCAAAAGCAAATCGTGTGGTTGCACTGTAGATCTCCATT 50365 Query 332972 GTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATG 333031 || | ||||||||||| || | ||| | || ||| ||||| || || |||| Sbjct 50364 GTTCTTCTTAGGGCCTGTTGAGCTCCACTCGTCATGCTGTCCGCCTCATCCAGAATGACC 50305 Query 333032 ATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTG 333091 | ||| || | || ||||||| || | ||| |||| |||||| ||| Sbjct 50304 AGCTTCTGCCTGCCTGGCGGCAGGGTGACTTTCTTCTGGGCGAATCCCTTGATGCGGTTG 50245 Query 333092 CGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCG 333151 ||||||||||| | |||||||||||| || |||||||| ||||| || || || | | Sbjct 50244 CGCACGACGTCGATGCCGCGCTCGTCGGAGGCGTTGAGCTCGAGGACTGCTTCCTTGTAT 50185 Query 333152 GCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGC 333211 | | || | || || || ||||| ||| ||||||||||| |||| ||| Sbjct 50184 ACATCGCCAAGCAGCTGTCGTGCGAGGCAGAGGATCGAGGTGGTCTTGCCGATGCCTGGC 50125 Query 333212 GGACCCGCCAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCA 333271 ||| | | | | || ||||| ||||| || ||| | ||||||| | Sbjct 50124 ATACCGGAGATGATCATGTGTGGCATATTGCCATCCTTGGCGATGATCTTGAGGCGTTCG 50065 Query 333272 ACGGCGTGCTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCC 333329 | || | |||||| || | ||||||||| | || ||||||||||||| || Sbjct 50064 ATGGTCTCGGTGTTGCCTACTACGTCGTCGAGGTAGACCGGACGGTACTTTTCGACCC 50007 >seq17 Length=926260 Score = 95.1 bits (104), Expect = 2e-13 Identities = 201/300 (67%), Gaps = 0/300 (0%) Strand=Plus/Minus Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942 || ||||| |||||| ||| ||| || || || |||| |||||||| || || Sbjct 107321 ACGTACGACTACATGTCACAGAAGTACTTTACACACGCCTCGCCGACGCTCTTCAACGCA 107262 Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002 ||||| || ||| |||| || || ||||| || | |||||||| | || || Sbjct 107261 GGCACTCCATCCCCTCAGATGTCCTCCTGCTTCCTCATTGACATGAAAGAGGACAGCATT 107202 Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062 || || ||||| ||||| || ||| || || | ||||||||| | || ||||| || Sbjct 107201 GACGGTATCTACGACACACTGAAGACCTGTGCCTTGATCTCCAAGACTGCTGGCGGTATT 107142 Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122 || | || || | || ||| | ||| ||||| | | ||||||||||| Sbjct 107141 GGCCTCAACGTGCATCGTATCCGTGCCACAGGCTCCTACATCGGTGGCACCAACGGAACT 107082 Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || || || | || ||||| || || | ||| |||| || || ||||| |||||| Sbjct 107081 TCGAATGGTCTCATTCCTATGCTCCGTGTCTACAACAACACAGCACGTTACGTTGACCAG 107022 Score = 91.5 bits (100), Expect = 2e-12 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Minus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| |||||| ||| ||| || | |||||| || | || | |||| ||||||||||| Sbjct 106718 TGGTATGCCATTCTCGAGGCGCAGACCGAGACTGGTAACCCTTTCATGCTCTACAAGGAC 106659 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCTGT 262214 ||| |||| || ||||||||| |||||||||| || | ||| || ||||||| | Sbjct 106658 GCCTGCAACAGGAAGAGCAACCAGAAGAACCTGGGTACTATCCGA-AG-CTCCAACCTCT 106601 Query 262215 GCACCGAGATCGTCCAGT 262232 |||| |||||| || ||| Sbjct 106600 GCACTGAGATCATCGAGT 106583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177804544823178