Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq18 136 6e-26
seq2 114 2e-19
seq17 95.1 2e-13
>seq18
Length=888533
Score = 136 bits (150), Expect = 6e-26
Identities = 207/289 (72%), Gaps = 7/289 (2%)
Strand=Plus/Minus
Query 1455779 TGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGG 1455838
||| |||||||| || ||||||||||| ||||| ||||| || ||||| | || ||
Sbjct 235229 TGGCAAATGTAC-AAGAAGGCCGAGGCTTCCTTCTGGACTGCTGAGGAAATTGATCTTTC 235171
Query 1455839 CGCCGA-CACGGTCCACTGGGTGTCGC---TGAGCGACGACGAGCGCCATTTCATCAAGC 1455894
| || | | | ||||| || ||| ||||||||||||| |||||| |
Sbjct 235170 CAAGGATCTCCATG-ACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTCATCTCCC 235112
Query 1455895 ACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGC 1455954
||||||||||||| || ||| ||| ||| ||||| || ||||||||| | || |||
Sbjct 235111 ACGTCCTCGCCTTCTT-CGCTGCCTCCGACGGCATTGTCAACGAGAACCTCGTCGAGCGC 235053
Query 1455955 TTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATC 1456014
||| || || ||| | || |||||||| | || ||||| ||||||||| ||
Sbjct 235052 TTTTCCGGCGAAGTACAAATCCCCGAGGCACGATGCTTCTACGGTTTCCAGATCATGATG 234993
Query 1456015 GAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCA 1456063
|| ||||||||||| || || || || || || |||||||| ||| |||
Sbjct 234992 GAGAACATCCACTCCGAGACATATTCTCTGCTCATCGACACATACATCA 234944
Score = 111 bits (122), Expect = 2e-18
Identities = 183/259 (71%), Gaps = 4/259 (2%)
Strand=Plus/Minus
Query 1456523 ATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGGCG 1456582
|||||| ||||| ||| || ||| ||||||| | |||||| | || || ||
Sbjct 234575 ATCATCACTGAGGCTGTCACAATTGAGCAAGAGTTCTTGAGCGAGGCTCTCCCCTGCGCA 234516
Query 1456583 CTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACCGCC 1456642
|| | || |||||||||||| || ||||||||||||||||| || || ||||| ||||
Sbjct 234515 CTTCTTGGTATGAACGCCACC-CTTATGTGCCAGTACATTGAGTTC-GTTGCCGATCGCC 234458
Query 1456643 TGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGGATG 1456702
|||| ||| |||||| | ||| |||| | ||||||| ||| | |||
Sbjct 234457 TGCTGTTGGCTCTCGGCAACACC-AAGGTCTACAATGCCACCAACCCCTTCGACTTCATG 234399
Query 1456703 GAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCG-TGGCGAGTACGCC 1456761
||| |||||||| | |||||||||||||| |||||| || | ||| || |||
Sbjct 234398 GAGAACATCTCGCTAGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGATTACCAG 234339
Query 1456762 AAGGCCGGCGTCACCGCCA 1456780
||||| || |||| ||||
Sbjct 234338 AAGGCTGGTGTCATGGCCA 234320
>seq2
Length=2710459
Score = 114 bits (126), Expect = 2e-19
Identities = 312/478 (65%), Gaps = 0/478 (0%)
Strand=Plus/Minus
Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911
||||| || |||||||| | |||| ||||| ||||| ||| ||||||| ||| |||
Sbjct 50484 TGGGCATCGGTGAGGCGTGCGTAGCGTAGGATTGCACATCGGGATTGCAGGGGCTCAATG 50425
Query 332912 ACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATG 332971
| | |||| ||||||||| | ||||| || || || | | | |||||
Sbjct 50424 ATTTTGTTCGACTGGTTGCAGGCAAAAGCAAATCGTGTGGTTGCACTGTAGATCTCCATT 50365
Query 332972 GTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATG 333031
|| | ||||||||||| || | ||| | || ||| ||||| || || ||||
Sbjct 50364 GTTCTTCTTAGGGCCTGTTGAGCTCCACTCGTCATGCTGTCCGCCTCATCCAGAATGACC 50305
Query 333032 ATCTTGTGGCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTG 333091
| ||| || | || ||||||| || | ||| |||| |||||| |||
Sbjct 50304 AGCTTCTGCCTGCCTGGCGGCAGGGTGACTTTCTTCTGGGCGAATCCCTTGATGCGGTTG 50245
Query 333092 CGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCG 333151
||||||||||| | |||||||||||| || |||||||| ||||| || || || | |
Sbjct 50244 CGCACGACGTCGATGCCGCGCTCGTCGGAGGCGTTGAGCTCGAGGACTGCTTCCTTGTAT 50185
Query 333152 GCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGC 333211
| | || | || || || ||||| ||| ||||||||||| |||| |||
Sbjct 50184 ACATCGCCAAGCAGCTGTCGTGCGAGGCAGAGGATCGAGGTGGTCTTGCCGATGCCTGGC 50125
Query 333212 GGACCCGCCAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCA 333271
||| | | | | || ||||| ||||| || ||| | ||||||| |
Sbjct 50124 ATACCGGAGATGATCATGTGTGGCATATTGCCATCCTTGGCGATGATCTTGAGGCGTTCG 50065
Query 333272 ACGGCGTGCTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCC 333329
| || | |||||| || | ||||||||| | || ||||||||||||| ||
Sbjct 50064 ATGGTCTCGGTGTTGCCTACTACGTCGTCGAGGTAGACCGGACGGTACTTTTCGACCC 50007
>seq17
Length=926260
Score = 95.1 bits (104), Expect = 2e-13
Identities = 201/300 (67%), Gaps = 0/300 (0%)
Strand=Plus/Minus
Query 259883 ACCTACGAGGCCATGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCC 259942
|| ||||| |||||| ||| ||| || || || |||| |||||||| || ||
Sbjct 107321 ACGTACGACTACATGTCACAGAAGTACTTTACACACGCCTCGCCGACGCTCTTCAACGCA 107262
Query 259943 GGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATC 260002
||||| || ||| |||| || || ||||| || | |||||||| | || ||
Sbjct 107261 GGCACTCCATCCCCTCAGATGTCCTCCTGCTTCCTCATTGACATGAAAGAGGACAGCATT 107202
Query 260003 GAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATC 260062
|| || ||||| ||||| || ||| || || | ||||||||| | || ||||| ||
Sbjct 107201 GACGGTATCTACGACACACTGAAGACCTGTGCCTTGATCTCCAAGACTGCTGGCGGTATT 107142
Query 260063 GGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAG 260122
|| | || || | || ||| | ||| ||||| | | |||||||||||
Sbjct 107141 GGCCTCAACGTGCATCGTATCCGTGCCACAGGCTCCTACATCGGTGGCACCAACGGAACT 107082
Query 260123 TCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182
|| || || || | || ||||| || || | ||| |||| || || ||||| ||||||
Sbjct 107081 TCGAATGGTCTCATTCCTATGCTCCGTGTCTACAACAACACAGCACGTTACGTTGACCAG 107022
Score = 91.5 bits (100), Expect = 2e-12
Identities = 105/138 (76%), Gaps = 4/138 (3%)
Strand=Plus/Minus
Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156
|||| |||||| ||| ||| || | |||||| || | || | |||| |||||||||||
Sbjct 106718 TGGTATGCCATTCTCGAGGCGCAGACCGAGACTGGTAACCCTTTCATGCTCTACAAGGAC 106659
Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCA--CGACAGAGGCCAACCTGT 262214
||| |||| || ||||||||| |||||||||| || | ||| || ||||||| |
Sbjct 106658 GCCTGCAACAGGAAGAGCAACCAGAAGAACCTGGGTACTATCCGA-AG-CTCCAACCTCT 106601
Query 262215 GCACCGAGATCGTCCAGT 262232
|||| |||||| || |||
Sbjct 106600 GCACTGAGATCATCGAGT 106583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177804544823178
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |