Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq6 140 1e-27
seq4 96.9 1e-14
>seq6
Length=1708680
Score = 140 bits (154), Expect = 1e-27
Identities = 253/368 (69%), Gaps = 8/368 (2%)
Strand=Plus/Plus
Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590
|||||| |||||||| | ||||| | | || |||||||| | ||||| | ||| |
Sbjct 880648 ACCCGAGGAAATTTCCGCCATGGTCCTTGGCAAGATGAAGGAGGTCGCTGAGACTTATCT 880707
Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650
||||| |||| | | ||||| | ||||| || ||||| || || || ||||||||
Sbjct 880708 CGGTGAGCCAGTTAAGAACGCTGTGGTCACTGTTCCCGCCTACTTCAACGACGCCCAGCG 880767
Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710
| | || ||||| || ||||| | || || || | || ||||| | | | || ||
Sbjct 880768 TGCCGCCACAAAGGACGCTGGAACTATCGCCGGTCTCAACGTTCTCCGTGTCGTCAACGA 880827
Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa---- 349766
|||||| || || || | || ||||| ||||| || || || || ||| ||
Sbjct 880828 ACCCACCGCCGCCGCTCTCGCTTATGGCCTTGACAA---GACCGATCA-GAAGGAACGCC 880883
Query 349767 aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAG 349826
| | ||| | | ||| | ||||||||||| || ||||| || | || || |||| |
Sbjct 880884 AGGTCCTTGTATACGATCTCGGTGGTGGTACCTTCGATGTGTCCATCCTGACTATTGAGG 880943
Query 349827 AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTG 349886
|||| |||| || || | | || |||||||| || ||||| ||||| || ||||| |
Sbjct 880944 AGGGCGTTTTCGAGGTCCAGTCTACCGCTGGTGACACTCATCTCGGTGGTGAGGATTTCG 881003
Query 349887 ATAATCGT 349894
| || |||
Sbjct 881004 ACAACCGT 881011
Score = 131 bits (144), Expect = 5e-25
Identities = 172/236 (73%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || ||||| || || || || || || || || |
Sbjct 771398 TTTGCATACCACCACGGAGGCGGAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGT 771457
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || |||||||| ||||| || || ||||| ||||| | || ||||| |
Sbjct 771458 AGTCCGACAGGGTGCGCCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGT 771517
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681
|||||||||| || || |||||||| || || ||| || ||||| || || | ||| ||
Sbjct 771518 CAGGAGGAATGCCCTCCTTATCCTGGATCTT-GCTCTTGACATTGTCGATAGTATCCGAA 771576
Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || || | || | ||||| || || || ||||| || || ||||||||
Sbjct 771577 GACTCGACCTCCAAGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 771632
Score = 127 bits (140), Expect = 6e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | ||||| | || || ||||| || || ||||| || || ||
Sbjct 771174 CATACCACCACGGAGACGAAGAACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTC 771233
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
||| | || || || || || || || ||||| || ||||| | || |||||||| ||
Sbjct 771234 AGAGAGAGTGCGACCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGCTGCTGATCTGG 771293
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685
||||| || || || || || ||||| ||| ||||| |||||||| | ||| || | ||
Sbjct 771294 GGGAATACCCTCCTTGTCTTGGATTTT-GCTCTTTACGTTATCAATGGTATCTGACGATT 771352
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || || || || | |||||||| || || || || || || || |||||
Sbjct 771353 CGACCTCGAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 771404
Score = 116 bits (128), Expect = 1e-20
Identities = 454/709 (64%), Gaps = 15/709 (2%)
Strand=Plus/Minus
Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256
|||| || || |||||||| ||||| || || || || || | | | | |||| |
Sbjct 534560 CCGCGATCGGTATCGATTTGGGTACGACCTACTCGTGCGTAGGCATCTTCCGTGATGACC 534501
Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316
| | || || || || || || || || ||| | || || || || | ||| || || |
Sbjct 534500 GCATCGAGATCATCGCCAACGACCAGGGAAACCGCACCACTCCCTCGTTCGTGGCTTTCA 534441
Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376
|||| |||||||| | || ||||| || || || || || | || || || | |
Sbjct 534440 CCGACACTGAGCGCCTCATCGGTGACTCGGCCAAGAACCAGGTCGCCATGAACCCTATCA 534381
Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTA 349430
| || || || || || ||||| || || ||| | ||||| | |||| ||
Sbjct 534380 ACACTGTCTTCGACGCAAAGCGCCTCATCGGTCGCAAGTTCGCCGATGCTGAGG--TC-- 534325
Query 349431 CACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAA 349490
|| | || | || ||||| || || | || || | | ||| |||| || ||
Sbjct 534324 --CAGGCCGACATGAAGCATTTCCCCTTCAAGGTCGT-CGACAAG--GGTGGCAAGCCTG 534270
Query 349491 TTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAA 349550
| || |||| || | || || || | || || ||||| || || ||||| |
Sbjct 534269 TCATCCAGGTCGAGTTCAAGGGCGAGGAGAAGACCTTCACCCCCGAGGAGATCTCATCCA 534210
Query 349551 TGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610
|||| | || |||| ||| | ||| || | || | || || || | | |
Sbjct 534209 TGGTCCTGACCAAGATGAGGGAGACTGCCGAGTCCTACCTTGGCTGCACCGTCAACAACG 534150
Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670
|||| | |||||||| ||||| || || || | |||||| || || || |||||||
Sbjct 534149 CTGTCGTCACTGTACCCGCCTACTTCAACGACTCACAGCGTCAAGCTACCAAGGATGCTG 534090
Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730
| |||||| || | || || || | || || || || || || || || || || |
Sbjct 534089 GTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCCGCTGCCATCG 534030
Query 349731 CATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790
| ||||| ||||| || | || | ||| ||| | || || || || || ||||
Sbjct 534029 CCTATGGTCTTGACAAGAAGACTACTGGAGAGCGCAATGTCCTCATCTTCGACTTGGGTG 533970
Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850
|||||||||| ||||| || || | || | || ||||| || || || || || | |
Sbjct 533969 GTGGTACTTTCGATGTTTCTCTCTTGACTATCGAGGAGGGTATCTTCGAGGTCAAGTCCA 533910
Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899
| || || || || ||| | ||||| || || || || || | |||||
Sbjct 533909 CCGCCGGAGACACTCATTTGGGTGGTGAGGACTTCGACAACAGACTCGT 533861
Score = 102 bits (112), Expect = 2e-16
Identities = 149/208 (72%), Gaps = 2/208 (1%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| |||||||| || |||||
Sbjct 771630 CATACCACCACGGAGGCGGAGGACGAGGTGGAGGGTTGACTCCTTTTGAATGTTGTAATC 771689
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
|| | || || || ||||| || || || || || ||||| | || ||||| |||||
Sbjct 771690 GGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGG 771749
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685
||| || || || |||||||| || || ||| || || || || || | || || | |
Sbjct 771750 AGGGATGCCCTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATAGTGTCCGAGGACT 771808
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713
|||| || || || | ||||| || ||
Sbjct 771809 CAACCTCGAGCGTGATGGTCTTGCCCGT 771836
>seq4
Length=2048726
Score = 96.9 bits (106), Expect = 1e-14
Identities = 191/283 (67%), Gaps = 0/283 (0%)
Strand=Plus/Plus
Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243
|||||| | ||||| | |||||| | || || | | || || || || |||||
Sbjct 1808302 TCATATTTTACCATGACATCTTCAAGCGCCTTGACCAAACGACGCTGGATGTATCCAGTC 1808361
Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303
| ||| || || || ||||| || | ||| |||||||| |||| || ||||||||
Sbjct 1808362 TCGGCAGTCTTCACGGCGGTATCGATGAGACCCTCACGACCAGCCATGGCGTGGAAGAAG 1808421
Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363
|| || | || ||||| |||| || | || |||| | |||||| | | | |||
Sbjct 1808422 AACTCGGATGGTGTAAGCCCACGAAGGTAGGAGTTCTCCACAAATCCGCGGGACTCGGGC 1808481
Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGT 378423
|||| || | || || |||| |||||||| | | || || ||||||||||| ||
Sbjct 1808482 GAATAGTCGTCCTTGGTGAAATGCGGTAATGTTCTGTACTTGAATCCATATGGAATGCGC 1808541
Query 378424 TTTCCATCAACATTCTGTTGACCAAGTGCAGAAACCATTTGAG 378466
| ||| || ||| || || || | ||| ||||||||||
Sbjct 1808542 TGTCCTTCGACAGCTTGCTGGCCGACGAGAGACACCATTTGAG 1808584
Score = 86.0 bits (94), Expect = 2e-11
Identities = 95/126 (75%), Gaps = 3/126 (2%)
Strand=Plus/Plus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
|||||||||||| | ||||| ||| || || | ||||| ||||| ||||| |||||
Sbjct 1807552 CGTGGCACACCAAGCGTAACGTTC---TTGGACGAGACACCGGCAAAATGGAAGGTATTG 1807608
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || || | ||||||||||| ||||| || |||| || |||||||| ||
Sbjct 1807609 AGTGTCATCTGCGTGGCTGGCTCACCAATAGACTGGGCAGCAAGCACACCAACCATCTCG 1807668
Query 377578 CCAGGA 377583
|| |||
Sbjct 1807669 CCCGGA 1807674
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515253060420407
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |