Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq6 140 1e-27 seq4 96.9 1e-14 >seq6 Length=1708680 Score = 140 bits (154), Expect = 1e-27 Identities = 253/368 (69%), Gaps = 8/368 (2%) Strand=Plus/Plus Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590 |||||| |||||||| | ||||| | | || |||||||| | ||||| | ||| | Sbjct 880648 ACCCGAGGAAATTTCCGCCATGGTCCTTGGCAAGATGAAGGAGGTCGCTGAGACTTATCT 880707 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 ||||| |||| | | ||||| | ||||| || ||||| || || || |||||||| Sbjct 880708 CGGTGAGCCAGTTAAGAACGCTGTGGTCACTGTTCCCGCCTACTTCAACGACGCCCAGCG 880767 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 | | || ||||| || ||||| | || || || | || ||||| | | | || || Sbjct 880768 TGCCGCCACAAAGGACGCTGGAACTATCGCCGGTCTCAACGTTCTCCGTGTCGTCAACGA 880827 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaa---- 349766 |||||| || || || | || ||||| ||||| || || || || ||| || Sbjct 880828 ACCCACCGCCGCCGCTCTCGCTTATGGCCTTGACAA---GACCGATCA-GAAGGAACGCC 880883 Query 349767 aTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAG 349826 | | ||| | | ||| | ||||||||||| || ||||| || | || || |||| | Sbjct 880884 AGGTCCTTGTATACGATCTCGGTGGTGGTACCTTCGATGTGTCCATCCTGACTATTGAGG 880943 Query 349827 AGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTG 349886 |||| |||| || || | | || |||||||| || ||||| ||||| || ||||| | Sbjct 880944 AGGGCGTTTTCGAGGTCCAGTCTACCGCTGGTGACACTCATCTCGGTGGTGAGGATTTCG 881003 Query 349887 ATAATCGT 349894 | || ||| Sbjct 881004 ACAACCGT 881011 Score = 131 bits (144), Expect = 5e-25 Identities = 172/236 (73%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || ||||| || || || || || || || || | Sbjct 771398 TTTGCATACCACCACGGAGGCGGAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGT 771457 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || |||||||| ||||| || || ||||| ||||| | || ||||| | Sbjct 771458 AGTCCGACAGGGTGCGCCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGT 771517 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGAT 140681 |||||||||| || || |||||||| || || ||| || ||||| || || | ||| || Sbjct 771518 CAGGAGGAATGCCCTCCTTATCCTGGATCTT-GCTCTTGACATTGTCGATAGTATCCGAA 771576 Query 140682 GGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || | || | ||||| || || || ||||| || || |||||||| Sbjct 771577 GACTCGACCTCCAAGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 771632 Score = 127 bits (140), Expect = 6e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || || ||||| || || ||||| || || || Sbjct 771174 CATACCACCACGGAGACGAAGAACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTC 771233 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || || || || || || ||||| || ||||| | || |||||||| || Sbjct 771234 AGAGAGAGTGCGACCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGCTGCTGATCTGG 771293 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 ||||| || || || || || ||||| ||| ||||| |||||||| | ||| || | || Sbjct 771294 GGGAATACCCTCCTTGTCTTGGATTTT-GCTCTTTACGTTATCAATGGTATCTGACGATT 771352 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || || || || | |||||||| || || || || || || || ||||| Sbjct 771353 CGACCTCGAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 771404 Score = 116 bits (128), Expect = 1e-20 Identities = 454/709 (64%), Gaps = 15/709 (2%) Strand=Plus/Minus Query 349197 CCGCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATC 349256 |||| || || |||||||| ||||| || || || || || | | | | |||| | Sbjct 534560 CCGCGATCGGTATCGATTTGGGTACGACCTACTCGTGCGTAGGCATCTTCCGTGATGACC 534501 Query 349257 GTGTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTA 349316 | | || || || || || || || || ||| | || || || || | ||| || || | Sbjct 534500 GCATCGAGATCATCGCCAACGACCAGGGAAACCGCACCACTCCCTCGTTCGTGGCTTTCA 534441 Query 349317 CCGAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAA 349376 |||| |||||||| | || ||||| || || || || || | || || || | | Sbjct 534440 CCGACACTGAGCGCCTCATCGGTGACTCGGCCAAGAACCAGGTCGCCATGAACCCTATCA 534381 Query 349377 ATACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTT-----TTCTGACAAATCTA 349430 | || || || || || ||||| || || ||| | ||||| | |||| || Sbjct 534380 ACACTGTCTTCGACGCAAAGCGCCTCATCGGTCGCAAGTTCGCCGATGCTGAGG--TC-- 534325 Query 349431 CACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAA 349490 || | || | || ||||| || || | || || | | ||| |||| || || Sbjct 534324 --CAGGCCGACATGAAGCATTTCCCCTTCAAGGTCGT-CGACAAG--GGTGGCAAGCCTG 534270 Query 349491 TTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAA 349550 | || |||| || | || || || | || || ||||| || || ||||| | Sbjct 534269 TCATCCAGGTCGAGTTCAAGGGCGAGGAGAAGACCTTCACCCCCGAGGAGATCTCATCCA 534210 Query 349551 TGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATG 349610 |||| | || |||| ||| | ||| || | || | || || || | | | Sbjct 534209 TGGTCCTGACCAAGATGAGGGAGACTGCCGAGTCCTACCTTGGCTGCACCGTCAACAACG 534150 Query 349611 CTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTG 349670 |||| | |||||||| ||||| || || || | |||||| || || || ||||||| Sbjct 534149 CTGTCGTCACTGTACCCGCCTACTTCAACGACTCACAGCGTCAAGCTACCAAGGATGCTG 534090 Query 349671 GCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTG 349730 | |||||| || | || || || | || || || || || || || || || || | Sbjct 534089 GTCTCATTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCCGCTGCCATCG 534030 Query 349731 CATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTG 349790 | ||||| ||||| || | || | ||| ||| | || || || || || |||| Sbjct 534029 CCTATGGTCTTGACAAGAAGACTACTGGAGAGCGCAATGTCCTCATCTTCGACTTGGGTG 533970 Query 349791 GTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAA 349850 |||||||||| ||||| || || | || | || ||||| || || || || || | | Sbjct 533969 GTGGTACTTTCGATGTTTCTCTCTTGACTATCGAGGAGGGTATCTTCGAGGTCAAGTCCA 533910 Query 349851 CTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGT 349899 | || || || || ||| | ||||| || || || || || | ||||| Sbjct 533909 CCGCCGGAGACACTCATTTGGGTGGTGAGGACTTCGACAACAGACTCGT 533861 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| |||||||| || ||||| Sbjct 771630 CATACCACCACGGAGGCGGAGGACGAGGTGGAGGGTTGACTCCTTTTGAATGTTGTAATC 771689 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || ||||| || || || || || ||||| | || ||||| ||||| Sbjct 771690 GGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGG 771749 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 ||| || || || |||||||| || || ||| || || || || || | || || | | Sbjct 771750 AGGGATGCCCTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATAGTGTCCGAGGACT 771808 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGT 140713 |||| || || || | ||||| || || Sbjct 771809 CAACCTCGAGCGTGATGGTCTTGCCCGT 771836 >seq4 Length=2048726 Score = 96.9 bits (106), Expect = 1e-14 Identities = 191/283 (67%), Gaps = 0/283 (0%) Strand=Plus/Plus Query 378184 TCATATCTAACCATTAAATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTT 378243 |||||| | ||||| | |||||| | || || | | || || || || ||||| Sbjct 1808302 TCATATTTTACCATGACATCTTCAAGCGCCTTGACCAAACGACGCTGGATGTATCCAGTC 1808361 Query 378244 TGACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAAT 378303 | ||| || || || ||||| || | ||| |||||||| |||| || |||||||| Sbjct 1808362 TCGGCAGTCTTCACGGCGGTATCGATGAGACCCTCACGACCAGCCATGGCGTGGAAGAAG 1808421 Query 378304 AATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGC 378363 || || | || ||||| |||| || | || |||| | |||||| | | | ||| Sbjct 1808422 AACTCGGATGGTGTAAGCCCACGAAGGTAGGAGTTCTCCACAAATCCGCGGGACTCGGGC 1808481 Query 378364 GAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGT 378423 |||| || | || || |||| |||||||| | | || || ||||||||||| || Sbjct 1808482 GAATAGTCGTCCTTGGTGAAATGCGGTAATGTTCTGTACTTGAATCCATATGGAATGCGC 1808541 Query 378424 TTTCCATCAACATTCTGTTGACCAAGTGCAGAAACCATTTGAG 378466 | ||| || ||| || || || | ||| |||||||||| Sbjct 1808542 TGTCCTTCGACAGCTTGCTGGCCGACGAGAGACACCATTTGAG 1808584 Score = 86.0 bits (94), Expect = 2e-11 Identities = 95/126 (75%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 |||||||||||| | ||||| ||| || || | ||||| ||||| ||||| ||||| Sbjct 1807552 CGTGGCACACCAAGCGTAACGTTC---TTGGACGAGACACCGGCAAAATGGAAGGTATTG 1807608 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || || | ||||||||||| ||||| || |||| || |||||||| || Sbjct 1807609 AGTGTCATCTGCGTGGCTGGCTCACCAATAGACTGGGCAGCAAGCACACCAACCATCTCG 1807668 Query 377578 CCAGGA 377583 || ||| Sbjct 1807669 CCCGGA 1807674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515253060420407