Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq17 206 3e-48
>seq17
Length=926260
Score = 206 bits (228), Expect = 3e-48
Identities = 330/463 (71%), Gaps = 12/463 (3%)
Strand=Plus/Minus
Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301
|||||||||||||| ||| || ||||||||||| |||||| |||| || || |||||
Sbjct 107325 TGAGACGTACGACTACATGTCACAGAAGTACTTTACACACGCCTCGCCGACGCTCTTCAA 107266
Query 53302 CGCTGGTACGA-ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACT 53360
||| || || ||| |||||||||||| ||||||||| | | ||||| || |||
Sbjct 107265 CGCAGGCACTCCATC-CCCTCAGATGTCCTCCTGCTTCCTCATTGACATGAAAGAGGACA 107207
Query 53361 CGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTG 53420
|| ||||| |||||||| || || ||| |||||| ||||||||| | || |
Sbjct 107206 GCATTGACGGTATCTACGACACACTGAAGACCTGTGCCTTGATCTCCAAGACTGCTGGCG 107147
Query 53421 GTATCGGTATCCAC-TGC-TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAA 53478
|||| || || || ||| ||| | ||||||| | ||| | ||| || || ||
Sbjct 107146 GTATTGGCCTCAACGTGCATCGTA--TCCGTGCCACAGGCTCCTACATCGGTGGCACCAA 107089
Query 53479 CGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536
||| | ||| |||| || | ||||||||||| |||| ||||||||| || || |||
Sbjct 107088 CGGAACTTCG--AATGGTCTCATTCCTATGCTCCGTGTCTACAACAACACAGCACGTTAC 107031
Query 53537 GTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596
|| |||||||||| ||||| || | || |||||||| || ||||| ||||||
Sbjct 107030 GTTGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTATCTTGAGCCATGGCAC 106971
Query 53597 GCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC 53656
||||| | | | || || || |||| ||| || || | |||||| | |||
Sbjct 106970 GCCGATGTCTTCGGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCT 106911
Query 53657 CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698
||||| || || ||| ||| ||||||| || || |||||||||
Sbjct 106910 CGTGATCTCTTCTAC-GCTTTGTGGATCCCCGATCTCTTCATG 106869
Score = 111 bits (122), Expect = 2e-19
Identities = 108/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845
|||||| |||||||| | |||||| ||||| |||||||| |||||| |||| || | ||
Sbjct 105798 TGCTGACCGTGGTGCCTTCATCGATCAGTCTCAGTCTCTCAACATCCACATGAAGGAGCC 105739
Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905
| | ||| |||| | | |||||||||||| || |||||| || |||||||||||
Sbjct 105738 TACTATGGGCAAGATCACGTCGATGCACTTTGCTGGTTGGAAGCTTGGTCTCAAGACGGG 105679
Query 55906 TATGTACTATCTGCGGACC 55924
|||||||| || || |||
Sbjct 105678 CATGTACTACCTCCGTACC 105660
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215528026200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |