Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq17 206 3e-48 >seq17 Length=926260 Score = 206 bits (228), Expect = 3e-48 Identities = 330/463 (71%), Gaps = 12/463 (3%) Strand=Plus/Minus Query 53242 TGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAA 53301 |||||||||||||| ||| || ||||||||||| |||||| |||| || || ||||| Sbjct 107325 TGAGACGTACGACTACATGTCACAGAAGTACTTTACACACGCCTCGCCGACGCTCTTCAA 107266 Query 53302 CGCTGGTACGA-ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACT 53360 ||| || || ||| |||||||||||| ||||||||| | | ||||| || ||| Sbjct 107265 CGCAGGCACTCCATC-CCCTCAGATGTCCTCCTGCTTCCTCATTGACATGAAAGAGGACA 107207 Query 53361 CGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTG 53420 || ||||| |||||||| || || ||| |||||| ||||||||| | || | Sbjct 107206 GCATTGACGGTATCTACGACACACTGAAGACCTGTGCCTTGATCTCCAAGACTGCTGGCG 107147 Query 53421 GTATCGGTATCCAC-TGC-TCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAA 53478 |||| || || || ||| ||| | ||||||| | ||| | ||| || || || Sbjct 107146 GTATTGGCCTCAACGTGCATCGTA--TCCGTGCCACAGGCTCCTACATCGGTGGCACCAA 107089 Query 53479 CGG--CGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTAC 53536 ||| | ||| |||| || | ||||||||||| |||| ||||||||| || || ||| Sbjct 107088 CGGAACTTCG--AATGGTCTCATTCCTATGCTCCGTGTCTACAACAACACAGCACGTTAC 107031 Query 53537 GTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCAC 53596 || |||||||||| ||||| || | || |||||||| || ||||| |||||| Sbjct 107030 GTTGACCAGGGTGGCAACAAGCGTCCCGGTGCCTTTGCCATCTATCTTGAGCCATGGCAC 106971 Query 53597 GCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC 53656 ||||| | | | || || || |||| ||| || || | |||||| | ||| Sbjct 106970 GCCGATGTCTTCGGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCT 106911 Query 53657 CGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATG 53698 ||||| || || ||| ||| ||||||| || || ||||||||| Sbjct 106910 CGTGATCTCTTCTAC-GCTTTGTGGATCCCCGATCTCTTCATG 106869 Score = 111 bits (122), Expect = 2e-19 Identities = 108/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATCC 55845 |||||| |||||||| | |||||| ||||| |||||||| |||||| |||| || | || Sbjct 105798 TGCTGACCGTGGTGCCTTCATCGATCAGTCTCAGTCTCTCAACATCCACATGAAGGAGCC 105739 Query 55846 TTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGG 55905 | | ||| |||| | | |||||||||||| || |||||| || ||||||||||| Sbjct 105738 TACTATGGGCAAGATCACGTCGATGCACTTTGCTGGTTGGAAGCTTGGTCTCAAGACGGG 105679 Query 55906 TATGTACTATCTGCGGACC 55924 |||||||| || || ||| Sbjct 105678 CATGTACTACCTCCGTACC 105660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215528026200