Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq17 246 3e-60 seq6 163 3e-35 seq29 102 9e-17 seq16 100 3e-16 seq18 84.2 2e-11 >seq17 Length=926260 Score = 246 bits (272), Expect = 3e-60 Identities = 1114/1748 (64%), Gaps = 71/1748 (4%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || |||||||||||||||||||| || |||||| || | |||||| || Sbjct 105661 GTACGGAGGTAGTACATGCCCGTCTTGAGACCAAGCTTCCAACCAGCAAAGTGCATCGAC 105720 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | || || | || |||| |||||| ||||||||||||||| |||| Sbjct 105721 GTGATCTTGCCCATAGTAGGCTCCTTCATGTGGATGTTGAGAGACTGAGACTGATCGATG 105780 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTA 80217 || || ||||| || || ||||| | || || | || | |||||||| || || Sbjct 105781 AAGGCACCACGGTCAGCAGCCATCTGGATGATGGTTCGCTGAGAGATTTCCCAAACAGTC 105840 Query 80218 CGATACACCTTACGAAGCTCCTCTGGAATGTCCAGATT---TTGCACACTGCCACCGTCC 80274 || | | ||| || ||||||| || | ||| | |||||| || Sbjct 105841 TTGTAAAGAGTCTTGGTCTCTTCAGGAATGTTGGGAATGCGTTGGATGGAGCCACCTTCT 105900 Query 80275 TTTACAATTTGATTTTTCAA-TTCAGACGTCCAGACACCAAGCTTGTGCAGATCTTTCAC 80333 | || |||| |||| ||| | | ||| | ||| | | | |||||| || | Sbjct 105901 GCAATGATACGATTCTTCATGTTCTCA-GACCACAGACCCATATCGACCAGATCCTTAAG 105959 Query 80334 AAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGT 80393 || ||| | | ||||| || ||||| || || || | ||| | Sbjct 105960 CAGCCATGGGTTGACGACTTGGAACTCACCAGCGAGCACACGGCGGGAGTAGATGTTCGA 106019 Query 80394 AGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCAT 80453 ||||| |||||||| ||||||||||||||||||||||| || || || ||||| Sbjct 106020 TGTGTATGGCTCAAAGCACTCGTTGTTTCCGAGGATCTGAGAGGTAGATGCAGTTGGCAT 106079 Query 80454 CGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCA---AATC 80510 || | | ||| || || || || | || |||| || | ||| || | | Sbjct 106080 GGGTGCAATCAAAAGAGAGTTGCGAACACCATGCTGAGCAATCTTCTCCTTCAGGGAGGC 106139 Query 80511 TGA---CCAAAAATCAACCCCAACGCTGTGACC--CCACATGTCGTGCTGCAAGATGCCC 80565 | ||| | |||| | || || ||||||||||| ||| | || ||| Sbjct 106140 CCAGTCCCACAGATCAGTAGGA-----GTCACATTCCACATGTCGTACTGAAGAATACCC 106194 Query 80566 TCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC 80625 | ||| | || || ||| || | |||| ||| ||||| |||||| | ||||| Sbjct 106195 TGAGACACTGGCGAACCCTCGTAGGTCTGGTATGGGCCGAGTTCCTTGGCGATGTCACAA 106254 Query 80626 GACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCA-CACCGCGCGC 80684 || | ||||| ||||| || ||| || |||| |||| | | | | || Sbjct 106255 GATGAAGTGAGGGCGGCGTGGTAGATGGTTTCGAAGATCTGGATGTTGAGCTTCTTG-GC 106313 Query 80685 CTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCC 80744 || ||| ||||| | ||||| || || ||| | ||||| || || || || || Sbjct 106314 CTCTGGCGACTCGAAGGGCAAGCGCAGAGCCAGGAAAGCATCAGCAAGACCTTGGACACC 106373 Query 80745 GATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTT 80804 ||| | || || | |||||| ||| || |||||| | |||||| ||| Sbjct 106374 CATGCCAATAGGCCTGTGGCGGAAGTTGCTGCGACGTGCCTCCTCGACTGGGTAGTGGTT 106433 Query 80805 ATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTG 80864 ||||||| ||||| ||||| || |||||| | || || || ||||| || || Sbjct 106434 GACCTCGATGATCTTGTTCAAATTGCGAGTGACAACCTGGGTGACCTCGTGAAGCTTTTG 106493 Query 80865 AAAGTCGAATTGGTTCCCCTTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATT 80918 |||||||| | | | ||| ||||| | || || ||||| || ||||| Sbjct 106494 GAAGTCGAACTCGCCACGCTTGTAATCAACAAAGGATGGGAGAGCAAGGGAAGCAAGATT 106553 Query 80919 GCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGA 80978 ||| || |||||||| |||| | | || |||||| ||| || ||||| | || || Sbjct 106554 GCAGACAGCCACCTCGTCAGGAGCAGTGTACTCGATGATCTCAGTGCAGAGGTTGGAG-- 106611 Query 80979 CTTA--ATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCAC 81036 ||| || ||||||||||| |||||||| ||| |||||| |||||||||||| | Sbjct 106612 CTTCGGATAGTACCCAGGTTCTTCTGGTTGCTCTTCCTGTTGCAGGCGTCCTTGTAGAGC 106671 Query 81037 ATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCT-------- 81088 ||| | ||| |||| |||||| ||| | || ||| ||||| | ||||| || Sbjct 106672 ATGAAAGGGTTACCAGTCTCGGTCTGCGCCTCGAGAATGGCATACCAAAGCTTCTGGGCA 106731 Query 81089 CGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCGTA-AGCTTCG 81147 || || || || ||| | ||| |||| | | || | ||| ||| || Sbjct 106732 CGGACGGTTTCACGACCACG----ATTCTCCTT----CTCGTAGCGGTGGTAGAGC-TCC 106782 Query 81148 TCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGGTGC 81207 ||||||| |||||| || || | || | || ||| || || || | ||| | Sbjct 106783 TCGAACTCATCACCGTAAACATCGGCAAGACCAGGAGCCTCATTGGGACAGAACAGCGTC 106842 Query 81208 CAGTCGGTGTCGTTCTCT---ACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCGGTG 81264 || || | |||||| || ||||||||| || |||||||| | ||| | Sbjct 106843 CATTC---ACCATTCTCTTGGACGCGCTTCATGAAGAGATCGGGGATCCACAAAGCGTAG 106899 Query 81265 AACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAGT 81322 || || || || |||||| |||| || | || ||||| |||||| || || ||| Sbjct 106900 AAGAGATCACG--AGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGC 106957 Query 81323 CCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG----- 81377 | | || || || ||||||||||| ||||| | ||| | | || | |||| Sbjct 106958 CGAAGACATCGGCGTGCCATGGCTCAAGATAGATGGCAAAGGCACC---GGGACGCTTGT 107014 Query 81378 -GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATAC 81436 ||||||||||| |||||||| || || ||| | ||||| | |||||| |||| || Sbjct 107015 TGCCACCCTGGTCAACGTAACGTGCTGTGTTGTTGTAGACACGGAGCATAGGAATGAGAC 107074 Query 81437 CATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCG--CACCTTGCTGAT 81494 ||| || ||||| || || |||| || || |||| || || ||| | Sbjct 107075 CATTCGAAGTTCCGTTGGTGCCACCGATGTAGGAGCCTGTGGCACGGATACGATGCACGT 107134 Query 81495 TGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCATA 81554 || || || || || || | ||| || ||| ||||| |||| || || || Sbjct 107135 TG--AGGCCAATACCGCCAGCAGTCTTGGAGATCAAGGCACAGGTCTTCAGTGTGTCGTA 107192 Query 81555 AATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACATCTGAGGGCT 81614 || || || ||||| || | ||||||||||| | ||| ||| |||||||||||| Sbjct 107193 GATACCGTCAATGCTGTCCTCTTTCATGTCAATGAGGAAGCAGGAGGACATCTGAGGGGA 107252 Query 81615 TTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGACATCAG 81674 | | ||| || ||||| || || || | ||||| | || || | |||||| Sbjct 107253 TGGAGTGCCTGCGTTGAAGAGCGTCGGCGAGGCGTGTGTAAAGTACTTCTGTGACATGTA 107312 Query 81675 GTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTACACGCAT 81734 ||| || || || || | || || | |||||||| |||| ||| |||||||| Sbjct 107313 GTCGTACGTCTCAATGGCCTTCTCGATGTCATTGCCGTGAATGCCGACAGCGACACGCAT 107372 Query 81735 AAACATGT 81742 | ||||| Sbjct 107373 CAGCATGT 107380 >seq6 Length=1708680 Score = 163 bits (180), Expect = 3e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | ||||||||||| || ||||| ||||||||||| | Sbjct 771176 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACAATCACTCTAGAGGTTGAGTCGTCT 771117 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| || ||||| || |||||||| || ||||| || ||| Sbjct 771116 GACACCATCGACAACGTAAAGAGCAAGATTCAAGATAAGGAGGGCATCCCTCCCGATCAG 771057 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || ||||| || |||||||| | ||| || || | ||||| ||| Sbjct 771056 CAGCGCCTTATCTTCGCGGGTAAACAGCTCGAGGACGGTCGCACTCTTTCGGACTACAAT 770997 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||||||||| |||||||| || | || | ||||| || || ||||| Sbjct 770996 ATCCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGCGGACA 770947 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || || ||||| || || | ||||| ||||| Sbjct 771632 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACCTTGGAGGTCGAGTCTTCG 771573 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | ||| || || ||||| |||||||| |||||||| |||||| Sbjct 771572 GATACTATCGACAATGTCAAGAGCAAGATCCAGGATAAGGAGGGCATTCCTCCTGACCAG 771513 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 771512 CAGCGCTTGATCTTCGCTGGCAAGCAGCTTGAGGATGGGCGCACCCTGTCGGACTACAAC 771453 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || ||||| ||| | || || || ||||| Sbjct 771452 ATCCAGAAGGAATCGACCCTCCATCTCGTCCTCCGCCTCCGTGGTGG 771406 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || || ||||| || || || ||||| || || Sbjct 771404 ATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTCGAATCGTCA 771345 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || | ||| ||||| || ||||||||||| ||||| ||||| ||| Sbjct 771344 GATACCATTGATAACGTAAAGAGCAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 771285 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || ||||| |||||||| | ||| || || | ||||| || Sbjct 771284 CAGCGCTTGATCTTCGCAGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAAC 771225 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| || || || | || | ||||| || ||||| Sbjct 771224 ATTCAGAAGGAATCTACACTCCACTTGGTTCTTCGTCTCCGTGGTGG 771178 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || |||||||| || || || ||||||||||| || | || | || | ||| Sbjct 771836 ACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCGGACACTATCGACAACGTCAAGAGC 771777 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || ||||| |||||||| || ||||| ||||||||||| | || || || || ||| Sbjct 771776 AAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 771717 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || ||||| || | || ||||| | || || || | |||||||| || || || || Sbjct 771716 CAGCTCGAAGACGGCCGCACCCTCTCCGATTACAACATTCAAAAGGAGTCAACCCTCCAC 771657 Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632 || ||| | || || || ||||| Sbjct 771656 CTCGTCCTCCGCCTCCGTGGTGG 771634 >seq29 Length=430389 Score = 102 bits (112), Expect = 9e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558 ||||||||||||||||| || ||||||||||| || || || || || ||||| |||||| Sbjct 67475 GACAAGGAGGGAATTCCCCCTGACCAGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAG 67534 Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 || | |||||||| | ||||| || |||| ||||| || || || || | ||| | Sbjct 67535 GACGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTC 67594 Query 27619 CGTCTTCGCGGTGG 27632 || || || ||||| Sbjct 67595 CGCCTCCGTGGTGG 67608 >seq16 Length=934283 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||| | || || ||||| |||||||| ||||| || ||||||||||| || || Sbjct 373897 AATGTCAAGTCCAAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATC 373838 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || || || ||||| |||||||| | || || || | ||||| || |||| ||||| Sbjct 373837 TTCGCCGGCAAGCAGCTCGAGGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAG 373778 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || || || || | ||| | ||||| || ||||| Sbjct 373777 TCAACGCTCCACTTGGTCCTCCGTCTCCGTGGTGG 373743 >seq18 Length=888533 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 64717 CGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATT 64776 ||||||| || ||||| ||||| || || ||||| || || || || || Sbjct 234779 CGTCTCGTCGCATTTGCTGCCGTGGAGGGCATCTTCTTCAGCGGCTCCTTTGCGTCCATC 234720 Query 64777 TTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCT 64836 || ||||| || ||||| || ||||||||||||||| | || || |||||||| ||||| Sbjct 234719 TTTTGGCTCAAGAAGCGTGGTCTGATGCCAGGTCTGACATTCTCCAACGAGCTCATCTCC 234660 Query 64837 CGGGACGAGGG 64847 || |||||||| Sbjct 234659 CGCGACGAGGG 234649 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309908107280