Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6 116 3e-21 >seq6 Length=1708680 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||||||| | || ||||| || || || |||| Sbjct 771176 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACAATCACTCTAGAGGTTGAGTCGTCT 771117 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || |||||||| || || ||||| || |||||||| Sbjct 771116 GACACCATCGACAACGTAAAGAGCAAGATTCAAGATAAGGAGGGCATCCCTCCCGATCAG 771057 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || ||||| | || ||| || || |||| || ||||| Sbjct 771056 CAGCGCCTTATCTTCGCGGGTAAACAGCTCGAGGACGGTCGCACTCTTTCGGACTACAAT 770997 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||||||||| || | || ||||| | ||| |||| || || Sbjct 770996 ATCCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGTGGCGG 770950 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||||| || || ||| | || || || || || ||| |||| Sbjct 771404 ATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTCGAATCGTCA 771345 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | || || ||||| |||||||| || || || || || ||||| Sbjct 771344 GATACCATTGATAACGTAAAGAGCAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCAG 771285 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| || || | ||| || || || | || ||| || || | || || |||||| Sbjct 771284 CAGCGCTTGATCTTCGCAGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAAC 771225 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| ||||| || || | || |||||| | ||| | || ||||| || Sbjct 771224 ATTCAGAAGGAATCTACACTCCACTTGGTTCTTCGTCTCCGTGGTGGTAT 771175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 27012 ACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAA 27071 || |||||| | || || || || || || | || ||| | || || | ||||| Sbjct 771836 ACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCGGACACTATCGACAACGTCAAGAGC 771777 Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || || || || ||||| || || || || ||||| || || | ||||||||| Sbjct 771776 AAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAGCAGCGCTTGATCTTCGCCGGCAAG 771717 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185 || | |||||| | ||| | |||||||||||||||||||||||||| ||| Sbjct 771716 CAGCTCGAAGACGGCCGCACCCTCTCCGATTACAACATTCAAAAGGAGTCAACC 771663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918024882880