Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq15 113 4e-20 >seq15 Length=938269 Score = 113 bits (124), Expect = 4e-20 Identities = 285/438 (65%), Gaps = 38/438 (9%) Strand=Plus/Plus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 |||||||| | ||||| ||| | | ||||| || ||||||||||||||||| || | | Sbjct 299222 ACATGAGCCAGCATGTGCGTTAATAAGGCGTAGCTGGCAATGTTGAACGGCACGCCCAGC 299281 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAG---------------------C 6715 |||||||| | ||| || ||||| ||| | || || | Sbjct 299282 CCCATGTCGCACGACCGCTGATATAGCAGCGAGTGCAATACGCCTCTGGGCTTCTGCGCC 299341 Query 6716 TCCCCAT-------TCGCG--------ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGG 6760 || || | ||||| |||||||| ||| | ||||||| ||||| Sbjct 299342 TCGCCCTCGCGCTGTCGCGGAAACGAGACGTAGAACTGGGCAAACATGTGGCAAGGGGGC 299401 Query 6761 AGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCA 6820 || ||||| |||||| |||||||| || | || | |||||| | || | Sbjct 299402 AGGGCCATTTTCTTCAGATCCGCGGGGTTCCATGCACTCAGTATGATCCTGCGATCGTAC 299461 Query 6821 GGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAG 6880 || || | |||| |||| ||||| | | |||||||| | ||||| |||| || Sbjct 299462 GGCTTATTCCTCAACTTGTCAATCACATCCGCGAGCTGGTCGACGCCCTGGCCCGTGTAA 299521 Query 6881 TCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGG 6940 ||||| | ||| | ||||||||| || || || | ||||||||| || || || || Sbjct 299522 TCCGCCGCATGCCCTCTATACTCCGCGCCGAAATGGCGCCACTGGAAGCCATATACAGGC 299581 Query 6941 CCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGC-TTGTCCAGAAAGTCTCGAGACCC 6999 ||||| |||||||||| | || || | |||| | |||| || | | || ||||| Sbjct 299582 CCCAACTCGCCCTCCT-CGTAGTCGGCCAGCCCCACGCTGTCGAGGTACGCGCGCGACCC 299640 Query 7000 GTGAGCGTCCCAGATCTT 7017 || ||||||||||||| Sbjct 299641 GTTGCCGTCCCAGATCTT 299658 Score = 113 bits (124), Expect = 4e-20 Identities = 285/438 (65%), Gaps = 38/438 (9%) Strand=Plus/Minus Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAA-GCGGGGGTTCCCATCTCG 34386 ||||||||||||| ||||||| || | | || |||| | |||| | || || Sbjct 299658 AAGATCTGGGACGGCAACGGGTCGCGCGCGTACCTCGACAGCGTGGGGCTGGCCGACTAC 299599 Query 34387 GGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | |||||||||| ||||| || || || || ||||||||| | || || || |||||||| Sbjct 299598 G-AGGAGGGCGAGTTGGGGCCTGTATATGGCTTCCAGTGGCGCCATTTCGGCGCGGAGTA 299540 Query 34447 TCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGA 34506 | | ||| | ||||| || |||| ||||| | |||||||| | | ||||| || Sbjct 299539 TAGAGGGCATGCGGCGGATTACACGGGCCAGGGCGTCGACCAGCTCGCGGATGTGATTGA 299480 Query 34507 CACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGA 34566 || |||| | || || | || | |||||| | || | || |||||||| ||| Sbjct 299479 CAAGTTGAGGAATAAGCCGTACGATCGCAGGATCATACTGAGTGCATGGAACCCCGCGGA 299420 Query 34567 TCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT--------C 34618 ||| ||||| || ||||| ||||||| | ||| |||||||| | Sbjct 299419 TCTGAAGAAAATGGCCCTGCCCCCTTGCCACATGTTTGCCCAGTTCTACGTCTCGTTTCC 299360 Query 34619 GCGA-------ATGGGGAG---------------------CTGTCCTGCCAGCTCTATCA 34650 |||| | || ||| || || | ||| ||||| Sbjct 299359 GCGACAGCGCGAGGGCGAGGCGCAGAAGCCCAGAGGCGTATTGCACTCGCTGCTATATCA 299300 Query 34651 ACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCAC 34710 || ||| | ||||||||| | || ||||||||||||||||| || ||||| | | || Sbjct 299299 GCGGTCGTGCGACATGGGGCTGGGCGTGCCGTTCAACATTGCCAGCTACGCCTTATTAAC 299240 Query 34711 GTACATGATCGCTCATGT 34728 | ||||| | |||||||| Sbjct 299239 GCACATGCTGGCTCATGT 299222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262013373680