Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq15 113 4e-20
>seq15
Length=938269
Score = 113 bits (124), Expect = 4e-20
Identities = 285/438 (65%), Gaps = 38/438 (9%)
Strand=Plus/Plus
Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676
|||||||| | ||||| ||| | | ||||| || ||||||||||||||||| || | |
Sbjct 299222 ACATGAGCCAGCATGTGCGTTAATAAGGCGTAGCTGGCAATGTTGAACGGCACGCCCAGC 299281
Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAG---------------------C 6715
|||||||| | ||| || ||||| ||| | || || |
Sbjct 299282 CCCATGTCGCACGACCGCTGATATAGCAGCGAGTGCAATACGCCTCTGGGCTTCTGCGCC 299341
Query 6716 TCCCCAT-------TCGCG--------ACGTAGAATTGGCAGAGGGTGTGGCACGGGGGG 6760
|| || | ||||| |||||||| ||| | ||||||| |||||
Sbjct 299342 TCGCCCTCGCGCTGTCGCGGAAACGAGACGTAGAACTGGGCAAACATGTGGCAAGGGGGC 299401
Query 6761 AGCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCA 6820
|| ||||| |||||| |||||||| || | || | |||||| | || |
Sbjct 299402 AGGGCCATTTTCTTCAGATCCGCGGGGTTCCATGCACTCAGTATGATCCTGCGATCGTAC 299461
Query 6821 GGGTTCCGCTTCAAGGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAG 6880
|| || | |||| |||| ||||| | | |||||||| | ||||| |||| ||
Sbjct 299462 GGCTTATTCCTCAACTTGTCAATCACATCCGCGAGCTGGTCGACGCCCTGGCCCGTGTAA 299521
Query 6881 TCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGG 6940
||||| | ||| | ||||||||| || || || | ||||||||| || || || ||
Sbjct 299522 TCCGCCGCATGCCCTCTATACTCCGCGCCGAAATGGCGCCACTGGAAGCCATATACAGGC 299581
Query 6941 CCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGC-TTGTCCAGAAAGTCTCGAGACCC 6999
||||| |||||||||| | || || | |||| | |||| || | | || |||||
Sbjct 299582 CCCAACTCGCCCTCCT-CGTAGTCGGCCAGCCCCACGCTGTCGAGGTACGCGCGCGACCC 299640
Query 7000 GTGAGCGTCCCAGATCTT 7017
|| |||||||||||||
Sbjct 299641 GTTGCCGTCCCAGATCTT 299658
Score = 113 bits (124), Expect = 4e-20
Identities = 285/438 (65%), Gaps = 38/438 (9%)
Strand=Plus/Minus
Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAA-GCGGGGGTTCCCATCTCG 34386
||||||||||||| ||||||| || | | || |||| | |||| | || ||
Sbjct 299658 AAGATCTGGGACGGCAACGGGTCGCGCGCGTACCTCGACAGCGTGGGGCTGGCCGACTAC 299599
Query 34387 GGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
| |||||||||| ||||| || || || || ||||||||| | || || || ||||||||
Sbjct 299598 G-AGGAGGGCGAGTTGGGGCCTGTATATGGCTTCCAGTGGCGCCATTTCGGCGCGGAGTA 299540
Query 34447 TCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGA 34506
| | ||| | ||||| || |||| ||||| | |||||||| | | ||||| ||
Sbjct 299539 TAGAGGGCATGCGGCGGATTACACGGGCCAGGGCGTCGACCAGCTCGCGGATGTGATTGA 299480
Query 34507 CACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGA 34566
|| |||| | || || | || | |||||| | || | || |||||||| |||
Sbjct 299479 CAAGTTGAGGAATAAGCCGTACGATCGCAGGATCATACTGAGTGCATGGAACCCCGCGGA 299420
Query 34567 TCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGT--------C 34618
||| ||||| || ||||| ||||||| | ||| |||||||| |
Sbjct 299419 TCTGAAGAAAATGGCCCTGCCCCCTTGCCACATGTTTGCCCAGTTCTACGTCTCGTTTCC 299360
Query 34619 GCGA-------ATGGGGAG---------------------CTGTCCTGCCAGCTCTATCA 34650
|||| | || ||| || || | ||| |||||
Sbjct 299359 GCGACAGCGCGAGGGCGAGGCGCAGAAGCCCAGAGGCGTATTGCACTCGCTGCTATATCA 299300
Query 34651 ACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCAC 34710
|| ||| | ||||||||| | || ||||||||||||||||| || ||||| | | ||
Sbjct 299299 GCGGTCGTGCGACATGGGGCTGGGCGTGCCGTTCAACATTGCCAGCTACGCCTTATTAAC 299240
Query 34711 GTACATGATCGCTCATGT 34728
| ||||| | ||||||||
Sbjct 299239 GCACATGCTGGCTCATGT 299222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448262013373680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |