Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq6 172 1e-37
seq16 100 6e-16
seq29 96.9 7e-15
>seq6
Length=1708680
Score = 172 bits (190), Expect = 1e-37
Identities = 177/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || ||||| |||| || | || ||| || || |||||||||||||
Sbjct 771177 ACCACCACGGAGACGAAGAACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTCAGA 771236
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| || ||||| || || || || || |||||||| || || || || ||
Sbjct 771237 GAGAGTGCGACCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGCTGCTGATCTGGGGG 771296
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||||||||||||||||||||| |||||| |||||| |||| || || || || | |||||
Sbjct 771297 AATACCCTCCTTGTCTTGGAT-TTTGCTCTTTACGTTATCAATGGTATCTGACGATTCGA 771355
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| ||||| ||||| ||||| || || | |||||| ||||| || |||||
Sbjct 771356 CCTCGAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 771404
Score = 172 bits (190), Expect = 1e-37
Identities = 177/229 (77%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || ||||| | || ||| || |||||||||||||| |
Sbjct 771405 ACCACCACGGAGGCGGAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGA 771464
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| |||||||| || || || || || |||||||| || || |||||| ||
Sbjct 771465 CAGGGTGCGCCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGG 771524
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| |||||||| || |||||| ||||| || || | |||||||| ||||||| ||||
Sbjct 771525 AATGCCCTCCTTATCCTGGATC-TTGCTCTTGACATTGTCGATAGTATCCGAAGACTCGA 771583
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| || | ||||| ||||||||||| | || || ||||| ||||||||
Sbjct 771584 CCTCCAAGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 771632
Score = 141 bits (156), Expect = 2e-28
Identities = 156/205 (76%), Gaps = 2/205 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || || || | || || ||||| |||||||| || |
Sbjct 771633 ACCACCACGGAGGCGGAGGACGAGGTGGAGGGTTGACTCCTTTTGAATGTTGTAATCGGA 771692
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||| || || || || || ||||| |||||||| || || |||||| ||
Sbjct 771693 GAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGGTCAGGAGG 771752
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|| |||||||| || |||||||| ||| || ||| | |||||||||||||| | || |
Sbjct 771753 GATGCCCTCCTTATCCTGGATCTT-GCTCTTGACGTTGTCGATAGTGTCCGAGGACTCAA 771811
Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075
| ||||| ||||| ||||| |||||
Sbjct 771812 CCTCGAGCGTGATGGTCTTGCCCGT 771836
>seq16
Length=934283
Score = 100 bits (110), Expect = 6e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || |||| || | ||| || || |||||||||||||| |
Sbjct 373743 CCACCACGGAGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGAG 373802
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| ||||| || || || ||||| ||||||| || || ||||| |||
Sbjct 373803 AGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGA 373862
Query 282993 ATACCCTCCTTGTCTTGGATCTT 283015
|| |||||||| || ||||||||
Sbjct 373863 ATGCCCTCCTTATCCTGGATCTT 373885
>seq29
Length=430389
Score = 96.9 bits (106), Expect = 7e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | || || || |||||||||||||| |
Sbjct 67609 ACCACCACGGAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 67550
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||| ||||| || || || ||||| ||||||| || || |||||| ||
Sbjct 67549 GAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCAGGGGG 67490
Query 282992 AATACCCTCCTTGTCT 283007
||| ||||||||||||
Sbjct 67489 AATTCCCTCCTTGTCT 67474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046738274617126
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |