Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6 141 2e-28
seq16 95.1 3e-14
>seq6
Length=1708680
Score = 141 bits (156), Expect = 2e-28
Identities = 157/208 (75%), Gaps = 1/208 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || |||||||||||||| || |||||||||||||| ||| |||||
Sbjct 771401 CAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTCGAATCGTCAGAT 771342
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || ||||| || || || || ||||| || || || || || || |||||
Sbjct 771341 ACCATTGATAACGTAAAGAGCAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAG 771282
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| | |||||||| ||||| |||||||| || || | ||||| | || || ||| |
Sbjct 771281 CGCTTGATCTTCGCAGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATT 771222
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131
|| || ||||| ||||| || |||| ||
Sbjct 771221 CAGAAGGAATCTACACTCCA-CTTGGTT 771195
Score = 140 bits (154), Expect = 8e-28
Identities = 143/187 (76%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002
|||| || || || ||||| |||||||| || ||| ||||| ||||| ||||||||
Sbjct 771838 TCACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCGGACACTATCGACAACGTCAAGA 771779
Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062
||||| ||||| || || || |||||||| |||||||| || | ||||||||||| |
Sbjct 771778 GCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAGCAGCGCTTGATCTTCGCCGGCA 771719
Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122
| ||||||||||| || | || || ||||||| ||| | ||||| || ||||| || |
Sbjct 771718 AGCAGCTCGAAGACGGCCGCACCCTCTCCGATTACAACATTCAAAAGGAGTCAACCCTCC 771659
Query 178123 ATCTTGT 178129
| || ||
Sbjct 771658 ACCTCGT 771652
Score = 132 bits (146), Expect = 1e-25
Identities = 153/205 (75%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || | || || || || ||||| || ||||| || || |||
Sbjct 771173 CAGATCTTCGTCAAGACCTTGACCGGCAAGACAATCACTCTAGAGGTTGAGTCGTCTGAC 771114
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| || |||||||| || || || || |||||||| || |||||
Sbjct 771113 ACCATCGACAACGTAAAGAGCAAGATTCAAGATAAGGAGGGCATCCCTCCCGATCAGCAG 771054
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| ||||||||||| || ||||||||||| || || | |||||| | || || || ||
Sbjct 771053 CGCCTTATCTTCGCGGGTAAACAGCTCGAGGACGGTCGCACTCTTTCGGACTACAATATC 770994
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
||||| || || || ||||| ||||
Sbjct 770993 CAAAAGGAGTCCACTCTGCA-CTTG 770970
>seq16
Length=934283
Score = 95.1 bits (104), Expect = 3e-14
Identities = 96/124 (77%), Gaps = 1/124 (1%)
Strand=Plus/Minus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| ||||| || || || || || ||||||||||| || || ||||||||||| ||
Sbjct 373885 AAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 373826
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|||||||| || || | ||||| |||| || ||| |||| || || ||||| || ||
Sbjct 373825 CAGCTCGAGGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCAACGCTCCA- 373767
Query 178125 CTTG 178128
||||
Sbjct 373766 CTTG 373763
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203730135826386
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |