Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 141 2e-28 seq16 95.1 3e-14 >seq6 Length=1708680 Score = 141 bits (156), Expect = 2e-28 Identities = 157/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || |||||||||||||| || |||||||||||||| ||| ||||| Sbjct 771401 CAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCCTCGAGGTCGAATCGTCAGAT 771342 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || ||||| || || || || ||||| || || || || || || ||||| Sbjct 771341 ACCATTGATAACGTAAAGAGCAAAATCCAAGACAAGGAGGGTATTCCCCCAGATCAGCAG 771282 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | |||||||| ||||| |||||||| || || | ||||| | || || ||| | Sbjct 771281 CGCTTGATCTTCGCAGGAAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAACATT 771222 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || ||||| ||||| || |||| || Sbjct 771221 CAGAAGGAATCTACACTCCA-CTTGGTT 771195 Score = 140 bits (154), Expect = 8e-28 Identities = 143/187 (76%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 177943 TCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAAC 178002 |||| || || || ||||| |||||||| || ||| ||||| ||||| |||||||| Sbjct 771838 TCACGGGCAAGACCATCACGCTCGAGGTTGAGTCCTCGGACACTATCGACAACGTCAAGA 771779 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| ||||| || || || |||||||| |||||||| || | ||||||||||| | Sbjct 771778 GCAAGATCCAGGATAAGGAGGGCATCCCTCCTGACCAGCAGCGCTTGATCTTCGCCGGCA 771719 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||||||||| || | || || ||||||| ||| | ||||| || ||||| || | Sbjct 771718 AGCAGCTCGAAGACGGCCGCACCCTCTCCGATTACAACATTCAAAAGGAGTCAACCCTCC 771659 Query 178123 ATCTTGT 178129 | || || Sbjct 771658 ACCTCGT 771652 Score = 132 bits (146), Expect = 1e-25 Identities = 153/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || | || || || || ||||| || ||||| || || ||| Sbjct 771173 CAGATCTTCGTCAAGACCTTGACCGGCAAGACAATCACTCTAGAGGTTGAGTCGTCTGAC 771114 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| || |||||||| || || || || |||||||| || ||||| Sbjct 771113 ACCATCGACAACGTAAAGAGCAAGATTCAAGATAAGGAGGGCATCCCTCCCGATCAGCAG 771054 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || ||||||||||| || ||||||||||| || || | |||||| | || || || || Sbjct 771053 CGCCTTATCTTCGCGGGTAAACAGCTCGAGGACGGTCGCACTCTTTCGGACTACAATATC 770994 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 ||||| || || || ||||| |||| Sbjct 770993 CAAAAGGAGTCCACTCTGCA-CTTG 770970 >seq16 Length=934283 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/124 (77%), Gaps = 1/124 (1%) Strand=Plus/Minus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 ||||| ||||| || || || || || ||||||||||| || || ||||||||||| || Sbjct 373885 AAGATCCAGGATAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATCTTCGCCGGCAAG 373826 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 |||||||| || || | ||||| |||| || ||| |||| || || ||||| || || Sbjct 373825 CAGCTCGAGGACGGCCGCACTCTCTCCGACTACAACATCCAGAAGGAGTCAACGCTCCA- 373767 Query 178125 CTTG 178128 |||| Sbjct 373766 CTTG 373763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730135826386