Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016- 05-18] 69 sequences; 38,501,010 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq16 138 1e-27 seq6 129 5e-25 seq29 120 3e-22 >seq16 Length=934283 Score = 138 bits (152), Expect = 1e-27 Identities = 117/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | |||| || ||||| ||||||||| ||||| |||||||| Sbjct 373742 GCCACCACGGAGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGA 373801 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| |||| |||||||||||||||||||| ||||||||||| ||||||| ||| Sbjct 373802 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 373861 Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778 || || |||||| ||| ||| || Sbjct 373862 AATGCCCTCCTTATCCTGGATCTT 373885 >seq6 Length=1708680 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || || |||||||| ||||| ||||| || Sbjct 771406 CCACCACGGAGGCGGAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 771465 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||||||| | || || ||||||||||| ||||| |||| |||||| ||||| | ||| Sbjct 771466 AGGGTGCGCCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 771525 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813 | || |||||| ||| ||| || ||| || | || | ||| || ||||| | Sbjct 771526 ATGCCCTCCTTATCCTGGATCTTGCTCTTGACATTGTCG--ATAGTATCCGAAGACTCGA 771583 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || |||||||| || || || ||||| |||||||| Sbjct 771584 CCTCCAAGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 771632 Score = 118 bits (130), Expect = 1e-21 Identities = 129/169 (76%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 |||||| |||||||| || |||||||||||||| |||| |||||||||||||||||||| Sbjct 771669 CTCCTTTTGAATGTTGTAATCGGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAA 771728 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790 |||| |||||| ||||| | || | || |||||| ||| ||| || ||| ||| Sbjct 771729 GATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGCTCTT-GACGT 771787 Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838 | | | |||||| ||||| ||||| | ||| || || || ||||| Sbjct 771788 TGTCGATAGTGTCCGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGT 771836 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || |||||||||||||| ||||| ||| Sbjct 771178 CCACCACGGAGACGAAGAACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTCAGAG 771237 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||||||||| || ||||| |||| |||||| || || | |||| Sbjct 771238 AGAGTGCGACCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGCTGCTGATCTGGGGGA 771297 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| |||||| ||| ||| | | || || ||| || || Sbjct 771298 ATACCCTCCTTGTCTTGGATTTTGCTCTT-TACGTTATCAATGGTATCTGACGATTCGAC 771356 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || || || ||||| ||||| || ||||| Sbjct 771357 CTCGAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 771404 >seq29 Length=430389 Score = 120 bits (132), Expect = 3e-22 Identities = 86/99 (87%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||||||||||| || |||| |||||||||||||||||||| Sbjct 67573 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 67514 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769 ||||||||||| ||||| | ||||| | ||||||||| Sbjct 67513 GATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTC 67475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303601262800