Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20DS3sAY3a_20[genbank_20GCA_5F001644535.1_202016-
05-18] 69 sequences; 38,501,010 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq16 138 1e-27
seq6 129 5e-25
seq29 120 3e-22
>seq16
Length=934283
Score = 138 bits (152), Expect = 1e-27
Identities = 117/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||| || ||||| ||||||||| ||||| ||||||||
Sbjct 373742 GCCACCACGGAGACGGAGGACCAAGTGGAGCGTTGACTCCTTCTGGATGTTGTAGTCGGA 373801
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
||| ||||| |||| |||||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 373802 GAGAGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGG 373861
Query 41755 AACGCTCTCCTTGTCCATGATTTT 41778
|| || |||||| ||| ||| ||
Sbjct 373862 AATGCCCTCCTTATCCTGGATCTT 373885
>seq6
Length=1708680
Score = 129 bits (142), Expect = 5e-25
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || ||||| || || |||||||| ||||| ||||| ||
Sbjct 771406 CCACCACGGAGGCGGAGGACGAGATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCCGAC 771465
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||||||| | || || ||||||||||| ||||| |||| |||||| ||||| | |||
Sbjct 771466 AGGGTGCGCCCATCCTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGA 771525
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||| ||| ||| || ||| || | || | ||| || ||||| |
Sbjct 771526 ATGCCCTCCTTATCCTGGATCTTGCTCTTGACATTGTCG--ATAGTATCCGAAGACTCGA 771583
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||||| || || || |||||||| || || || ||||| ||||||||
Sbjct 771584 CCTCCAAGGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 771632
Score = 118 bits (130), Expect = 1e-21
Identities = 129/169 (76%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
|||||| |||||||| || |||||||||||||| |||| ||||||||||||||||||||
Sbjct 771669 CTCCTTTTGAATGTTGTAATCGGAGAGGGTGCGGCCGTCTTCGAGCTGCTTGCCGGCGAA 771728
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGA 41790
|||| |||||| ||||| | || | || |||||| ||| ||| || ||| |||
Sbjct 771729 GATCAAGCGCTGCTGGTCAGGAGGGATGCCCTCCTTATCCTGGATCTTGCTCTT-GACGT 771787
Query 41791 CGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGT 41838
| | | |||||| ||||| ||||| | ||| || || || |||||
Sbjct 771788 TGTCGATAGTGTCCGAGGACTCAACCTCGAGCGTGATGGTCTTGCCCGT 771836
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || |||||||||||||| ||||| |||
Sbjct 771178 CCACCACGGAGACGAAGAACCAAGTGGAGTGTAGATTCCTTCTGAATGTTGTAGTCAGAG 771237
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| ||||| |||| ||||||||||| || ||||| |||| |||||| || || | ||||
Sbjct 771238 AGAGTGCGACCGTCCTCGAGCTGCTTTCCTGCGAAGATCAAGCGCTGCTGATCTGGGGGA 771297
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | ||||||||| |||||| ||| ||| | | || || ||| || ||
Sbjct 771298 ATACCCTCCTTGTCTTGGATTTTGCTCTT-TACGTTATCAATGGTATCTGACGATTCGAC 771356
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||| | || || || || || || || ||||| ||||| || |||||
Sbjct 771357 CTCGAGGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 771404
>seq29
Length=430389
Score = 120 bits (132), Expect = 3e-22
Identities = 86/99 (87%), Gaps = 0/99 (0%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| |||||||||||||| || |||| ||||||||||||||||||||
Sbjct 67573 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 67514
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769
||||||||||| ||||| | ||||| | |||||||||
Sbjct 67513 GATCAGGCGCTGCTGGTCAGGGGGAATTCCCTCCTTGTC 67475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303601262800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |