Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq13 196 5e-45 seq5 127 2e-24 seq44 114 1e-20 seq9 109 6e-19 >seq13 Length=704243 Score = 196 bits (216), Expect = 5e-45 Identities = 215/283 (76%), Gaps = 5/283 (2%) Strand=Plus/Plus Query 116639 TGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCC 116698 |||| |||||||| |||||||| || || |||||||| | ||| ||| | || || ||| Sbjct 439394 TGGCAAATGTACAAGAAGGCCGAAGCATCCTTCTGGACAGCCGAAGAGATTGATCTCTCC 439453 Query 116699 AAGGA-CACGAGCGACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 ||||| | | | ||||||| | ||| ||||||||| |||||||| || ||| || Sbjct 439454 AAGGATCTCCA-CGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTTATCTCCCA 439512 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTT 116814 ||| || ||||||||||||||| || ||||||||||||||||| || |||||||| || Sbjct 439513 CGTCCTAGCCTTTTTCGCCGCCTCAGATGGCATCGTCAACGAGAACCTAGTCGAGCGCTT 439572 Query 116815 CGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGA 116874 | | || || || | |||||||| |||||||||||||||| |||||| ||||| Sbjct 439573 CTCCGGCGAAGTACAAATACCCGAGGCGAGGTGCTTCTACGGCTTCCAGATCATGATGGA 439632 Query 116875 GAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||| | ||||| || | || || || |||||||| ||| Sbjct 439633 GAACATCCACTCAGAGACATACTCTCTGCTGATCGACACCTAC 439675 Score = 163 bits (180), Expect = 3e-35 Identities = 317/458 (69%), Gaps = 10/458 (2%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| ||||| |||||| | | | | || |||| | | || | Sbjct 439789 AGAAGGCCGACTGGGCTCTGCGATGGATCTCTGATAAGAACTCCACCTTTGCGAACCGTC 439848 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || ||||| ||||||||||| ||||||| || |||||| |||| || | Sbjct 439849 TTGTCGCGTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCCTCCATCTTCT 439908 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| ||||| |||||||||||||| || ||| |||||||||||| || | | Sbjct 439909 GGCTGAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCGCGTG 439968 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 ||||||| |||| ||| || ||||| | || || | || || || | Sbjct 439969 ACGAGGGCATGCACACCGATTTCGCCTGCCTCCTCTTTTCTCTCCTGAACACTCGTCCCA 440028 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || || | ||| || ||| |||| || || ||| | ||||||||| ||||| | Sbjct 440029 GCAAGGAGTCGGTCCAGGCCATCATCACTGAAGCTGTCACAATCGAGCAGGAATTCCTGA 440088 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACAT 117339 | || || ||||| |||| |||||| || | || || | | |||| |||||||| Sbjct 440089 CTGAGGCTCTGCC-TTGCGCTCTGCTCGGCATGAA-CGCTACCCTCATGTGCCAATACAT 440146 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGG---CGCCAAGCACTACAACAC 117396 |||||||| |||||| | ||||| || | ||| |||| | ||||| ||||| | Sbjct 440147 TGAGTTCGTTGCCGACCGTCTGCT-CTTG-GCT-CTCGGTAACACCAAGGTGTACAATGC 440203 Query 117397 GCCCAACCCGCTGGACTTTATGAACCTCATCTCCTTGG 117434 ||||||| | ||||| ||| | |||||||||| Sbjct 440204 CACCAACCCCTTCGACTTCATGGAGAATATCTCCTTGG 440241 >seq5 Length=873697 Score = 127 bits (140), Expect = 2e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| | | | Sbjct 38892 ATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACCTTGGAGGTTGAATCGAGC 38833 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||| || || | ||||| |||||||| || | ||||| Sbjct 38832 GATACCATCGATAACG-TCAAATCGAAGATCCAAGACAAGGAGGGCATTCCACCTGACCA 38774 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || ||||||||||| |||| | || ||| |||||||| Sbjct 38773 GCAGCGTCTTATCTTCGCTGGTAAACAGCTGGAAGACGGTAGGACGCTCTCTGACTACAA 38714 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||||||| | |||||||| Sbjct 38713 CATTCAGAAGGAGTCTACGCTGCA 38690 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAA 40773 || |||||||| ||||| | || ||||| | |||| | | | | | | ||| Sbjct 39324 ACCGGCAAAACTATCACGCTTGAGGTCGAGTCGTCCGATACCATTGACAATGTTAAGTCG 39265 Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| |||||||| || | || ||||| || | |||| ||| ||||| Sbjct 39264 AAGATTCAGGACAAGGAGGGCATTCCGCCAGATCAGCAGCGCTTGATCTTCGCCGGCAAG 39205 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | || ||||| ||||||||| |||||||||||| | || |||||| Sbjct 39204 CAGCTCGAGGATGGCCGTACCCTATCCGACTACAATATCCAGAAGGAGTCTACTCTGCAT 39145 Query 40894 CTAGTGTTGCGCTTGAGGGGCGG 40916 || || || ||| || | || || Sbjct 39144 CTCGTCTTACGCCTGCGCGGTGG 39122 >seq44 Length=299893 Score = 114 bits (126), Expect = 1e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 40772 AAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCA 40831 || ||||| | ||||| |||||||| ||| |||||||||| || || |||| ||| |||| Sbjct 197928 AATAAATTGTAGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTCGCCGGCA 197987 Query 40832 AACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGC 40891 | ||||| || || | ||||||||| |||||||||||||||||||||| | || || | Sbjct 197988 AGCAGCTCGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTC 198047 Query 40892 A 40892 | Sbjct 198048 A 198048 >seq9 Length=754770 Score = 109 bits (120), Expect = 6e-19 Identities = 90/110 (82%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||| ||| |||||||||| || || || | ||| ||||| ||||| || Sbjct 276280 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCAAGCAGCTCGAG 276221 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||||||| ||||||||||||||||||||| | ||||| || Sbjct 276220 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAATCGACGCTTCA 276171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515217564179040