Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5 125 6e-24 seq44 104 2e-17 seq13 98.7 9e-16 >seq5 Length=873697 Score = 125 bits (138), Expect = 6e-24 Identities = 160/217 (74%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCG-CGTA---T 118584 ||||||||| | |||||||| || ||||||||||| || | || ||| | || | Sbjct 38683 CACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTC----AGAGAGCGTCCTACCGT 38738 Query 118585 CCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT 118644 | || |||||||| |||||| |||| ||||||||||| || || || ||||||||||||| Sbjct 38739 CTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGT 38798 Query 118645 CTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTC---TCGACCTCGACGGTCA 118701 || || || ||| || | |||| ||| || |||| || ||||| | ||| | Sbjct 38799 CTTGGATCTTCGATTTGACGTTATCGATGGTATC---GCTCGATTCAACCTCCAAGGTGA 38855 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||||||| ||||| || || || |||||||| Sbjct 38856 TGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || || || || ||||| ||||| || | ||| ||| ||| || Sbjct 38911 CACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCCATCTTC 38970 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | ||| || |||||| | |||||||| |||||||| ||||| || |||||||| || Sbjct 38971 TAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCCTTATCCTG 39030 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| ||| |||| ||| ||||||| || | || || Sbjct 39031 AATCTTCGACTTGACGTTGTCGATGGTATCCGATGACTCCACCTCGAGCGTAATGGTCTT 39090 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || || ||||||||||| Sbjct 39091 GCCAGTCAATGTCTTGACGAAAATCTGCAT 39120 Score = 95.1 bits (104), Expect = 1e-14 Identities = 126/175 (72%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || || || ||||| ||| | || || |||||||||||| || || Sbjct 39152 GTAGACTCCTTCTGGATATTGTAGTCGGATAGGGTACGGCCATCCTCGAGCTGCTTGCCG 39211 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| | ||||||||||| || || |||||||||||||| ||| || ||| Sbjct 39212 GCGAAGATCAAGCGCTGCTGATCTGGCGGAATGCCCTCCTTGTCCTGAATCTTCGACTTA 39271 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCA 118716 || | || | ||| || | ||||||||| | || | ||||||||||||| Sbjct 39272 ACATTGTCAATGGTATCGGACGACTCGACCTCAAGCGTGATAGTTTTGCCGGTCA 39326 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||||||| || || || |||||||||||| || || Sbjct 39436 GTCGACTCCTTCTGGATGTTGTAATCGGACAAGGTACGGCCATCCTCGAGCTGCTTGCCG 39495 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGTTT 118660 ||| |||| | |||||||||||||| || ||||| ||||||| ||| | || | ||| Sbjct 39496 GCGAAGATCAAGCGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGCTCTTT 39555 Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || | |||| ||||| | ||| ||||||| ||| | || || ||||| Sbjct 39556 -ACGTTGTCGATCGTGTCTGACGACTCCACCTCGAGGGTGATAGTCTTACCGGT 39608 >seq44 Length=299893 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| | ||||| ||||||| Sbjct 198054 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCG 197995 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| ||||||||||| || || || ||||||||||||||| | Sbjct 197994 AGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTACA 197935 Query 118650 ATTTTTT 118656 |||| || Sbjct 197934 ATTTATT 197928 >seq13 Length=704243 Score = 98.7 bits (108), Expect = 9e-16 Identities = 243/365 (67%), Gaps = 13/365 (4%) Strand=Plus/Plus Query 44942 ATGCCCGGACTGACGTTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAAC 45001 |||||||| || || || |||||| | |||||| | ||||| || |||||||| | Sbjct 439929 ATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCGCGTGACGAGGGCATGCACACCGAT 439988 Query 45002 TTTGCCTGCCTCTACTATAATACG----AGAGTCGATCAAAAGTTGGACGCGCCCACCGT 45057 || ||||||||| || | | | | ||| || | ||| || || Sbjct 439989 TTCGCCTGCCTCCTCTTTTCTCTCCTGAACACTCG-TCCCAGCAAGGAGTCG------GT 440041 Query 45058 CAACGACATGTTCTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCC 45117 | | | ||| || | ||||| || | |||||| |||||| | ||||||||||||| Sbjct 440042 CCAGGCCATCATCACTGAAGCTGTCACAATCGAGCAGGAATTCCTGACTGAGGCTCTGCC 440101 Query 45118 CGAATCGTTGGTGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGA 45177 | || | || |||||||| | | ||| | | ||||||||||| || ||||| Sbjct 440102 TTGCGCTCTGCTCGGCATGAACGCTACCCTCATGTGCCAATACATTGAGTTCGTTGCCGA 440161 Query 45178 TCGTCTTCTCGTCCAGTTAAAGTATC-CCAAGATGTACTATACTGAGAACCCATTCGAGT 45236 ||||| ||| | | ||| | ||||| ||||| || | ||||| ||||| | Sbjct 440162 CCGTCTGCTC-TTGGCTCTCGGTAACACCAAGGTGTACAATGCCACCAACCCCTTCGACT 440220 Query 45237 TTATGAACAATATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAAT 45296 | ||| | ||||| || |||| ||||| || || || || ||||| ||||| ||||| | Sbjct 440221 TCATGGAGAATATCTCCTTGGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGACT 440280 Query 45297 ACAAG 45301 || || Sbjct 440281 ACCAG 440285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829057023768