Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq5 136 5e-27
>seq5
Length=873697
Score = 136 bits (150), Expect = 5e-27
Identities = 170/233 (73%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010
|| ||||| || | | ||| | |||||| |||| || |||||| ||||| |||||
Sbjct 38660 TACTGTCCGCCACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAG 38719
Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070
|||| || |||| |||| || ||||| ||||||||||| || || |||||||||||
Sbjct 38720 TCAGAGAGCGTCCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCA 38779
Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT 43130
| || | || ||||||||| ||| || ||||| | | | || |||||||||
Sbjct 38780 GGTGGAATGCCCTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGAT 38839
Query 43131 TCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
|| || || | |||||||| ||||| || || ||||| || ||||| |||||
Sbjct 38840 TCAACCTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892
Score = 100 bits (110), Expect = 3e-16
Identities = 156/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | |||||| || | ||| ||||| ||||||||||| || | ||||| ||| |
Sbjct 38905 ACGGAGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCC 38964
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
|| |||| |||||| |||||||| ||||| || ||||| || | || | | ||||||
Sbjct 38965 ATCTTCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCCTT 39024
Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 43145
||| ||| | || | |||| ||| | | | || || || ||||| |||| |||
Sbjct 39025 ATCC-TGAATCTTCGACTTGA-CGTTGTCGATGGTATCCGATGACTCCACCTCGAGCGTA 39082
Query 43146 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183
||||| ||||| || | ||||| || || || |||||
Sbjct 39083 ATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571815784479120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |