Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq5 107 2e-18
seq44 86.0 5e-12
seq9 86.0 5e-12
>seq5
Length=873697
Score = 107 bits (118), Expect = 2e-18
Identities = 149/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||||||||| ||||||||||||||||||||| || | | |||| |||
Sbjct 38684 ACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTCCTACCGTCTTCC 38743
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| || ||||| || | ||||| ||||| || || | |||||||||||
Sbjct 38744 AGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGG 38803
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || || || | | | | || | || ||||||| ||| || ||||||
Sbjct 38804 ATCTTCGATTTGACGTTATCGATGGTATCGCTCGATTCAACCTCCAAGGTGATGGTCTTG 38863
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || ||||||||||| ||||| |||||
Sbjct 38864 CCGGTGAGAGTCTTCACGAAGATCTGCAT 38892
>seq44
Length=299893
Score = 86.0 bits (94), Expect = 5e-12
Identities = 95/127 (75%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| || |||| | || ||
Sbjct 198054 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCG 197995
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| || | ||||| ||||| || || | ||||||||||| ||
Sbjct 197994 AGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTACA 197935
Query 45248 ATTTTTT 45254
|||| ||
Sbjct 197934 ATTTATT 197928
>seq9
Length=754770
Score = 86.0 bits (94), Expect = 5e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| ||||| |||||||| |||||||||||| || ||| |||| ||
Sbjct 276165 ACCAAGTGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCG 276224
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| || || |||||||| |||| ||||| ||||| || || | ||||||||||||
Sbjct 276225 AGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 276281
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395073976995334
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |