Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq93 293 2e-74 seq5 131 1e-25 seq13 118 9e-22 >seq93 Length=73557 Score = 293 bits (324), Expect = 2e-74 Identities = 647/958 (68%), Gaps = 19/958 (2%) Strand=Plus/Minus Query 23028 AGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATA 23087 || |||| ||||| || || ||||| || | |||||||| | || || || || | Sbjct 32609 AGCCAAG-TTGCAAACAGCGACCTCATCAGGCGCGGTGTACTCGATGATCTCAGTGCACA 32551 Query 23088 GATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCT 23147 | ||| | || || || | ||| |||||||||| || || ||||| | ||||| Sbjct 32550 GGTTGGAGCTGCGGATGGTACCGAGATTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCT 32491 Query 23148 TGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAG 23207 |||| |||||| | || | || ||||| ||| | ||||| ||| || ||| | Sbjct 32490 TGTAAAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCGAGGATGGCATACCAAAGCT 32431 Query 23208 TCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGCG 23266 |||| || | || ||| | || | | ||| || | ||| || || || | | | Sbjct 32430 TCTGGGCACGCACT-GTCTCGCGGCCACGGCCCTCCTTCTCATAGCGGTGATAGAGCTCC 32372 Query 23267 TCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTC 23326 || || || ||||||| ||| || |||||||| | | | || ||||| || || Sbjct 32371 TCGAACTCATCACCGTAGACGTCCGCGAGGCCGGGAGCCTCGTTGGGGCACATCAGCGTC 32312 Query 23327 CACATTGAGTCATTTTCA---ACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 ||| | | ||||| || || |||| || ||||| || ||||| ||||||||| Sbjct 32311 CACTC---GCCGTTTTCCTGCACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAG 32255 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 || || |||||||| || ||||| || |||||| |||||| | ||||| ||| | Sbjct 32254 AAGAGGTCGCGGGCACGAACCTCTTCCTTGCCGTGGTTCTTACGAAGGTCCAAGAAGCCA 32195 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || || || || ||||||||||||||||| | ||| || || || || | ||| ||||| Sbjct 32194 AATACATCAGCGTGCCACGGCTCGAGGTAGATGGCGAAAGCACCTGGACGCTTGTTGCCA 32135 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 ||||| |||||||| || || ||||||||||| || | ||||| || | |||||| || Sbjct 32134 CCCTGGTCGACGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAATGAGACCATTC 32075 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 || | ||| | ||| | | || || | || |||| | ||| |||| || | Sbjct 32074 GATGTACCGTTTGTGCCACCAATGTAGGAGCCGGTGGCACGAATGCGGTGCACGTTGAGA 32015 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || | | || || |||| || ||| || || || |||||||| || Sbjct 32014 CCAATACCGCCAGCGGTCTTGGAGATCAAAGCACATGTCTTAAGTGTATCGTAGATTCCA 31955 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTG-CGCTTTGGGCGT 23742 || |||||||| || || | ||| | ||| || || ||||| || || |||| || Sbjct 31954 TCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGAGGCGATGGG-GT 31896 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACAT-TAGATTGT 23801 | | || ||| ||||| ||| ||||| || ||||| | |||||| ||| | || Sbjct 31895 ACCCGCGTTGAAAAGTGTAGGGGAAGCGTGTGTGAAGTACTTCTGCGACATGTAG-TCGT 31837 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCA 23861 | || |||||||| || || ||||| ||||| || |||| || |||||||||| || Sbjct 31836 ATGTCTCGATGGCCTTCTCGATATCCTCGCCGTGGATGCCGACAGCCACGCGCATCAGCA 31777 Query 23862 TGTATTGAGGTCTCTCG---ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCA 23918 ||| ||| || | ||| ||| | |||||| || || || ||||| || | | Sbjct 31776 TGTGTTGTGGGCGTTCGGCAACCTT---GCCGTTGATGCGGAGGAGGTATGAGCGCTCGA 31720 Query 23919 TCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 ||| || || || || | | ||||| || || || || | || |||||||| || Sbjct 31719 GCGTCTTGAAGCCGAAGAATTGGTAGTTGAAATCGCGGTCATAGACAATGGCCGAGTT 31662 >seq5 Length=873697 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || |||||| || | Sbjct 38892 ATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACCTTGGAGGTTGAATCGAGC 38833 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| || || |||||||| ||| | || || |||||| Sbjct 38832 GATACCATCGATAACGTCAAATCGAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAG 38773 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| |||||| |||||||| || ||| | || || ||| Sbjct 38772 CAGCGTCTTATCTTCGCTGGTAAACAGCTGGAAGACGGTAGGACGCTCTCTGACTACAAC 38713 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || || || || || || |||| ||| | || | ||||| Sbjct 38712 ATTCAGAAGGAGTCTACGCTGCACTTGGTGCTTCGTCTTCGTGGCGG 38666 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 31217 ACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAG 31276 || || || || |||||| |||| || || |||| |||| |||| | || ||| || Sbjct 39608 ACCGGTAAGACTATCACCCTCGAGGTGGAGTCGTCAGACACGATCGACAACGT-AAAGAG 39550 Query 31277 AGA-ATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAA 31335 | || ||||||||||||| | || ||||| |||||||| | || ||||| ||||| Sbjct 39549 CAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGCGCTTGATCTTCGCCGGCAA 39490 Query 31336 ACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCA 31395 ||| | || || || || |||||| ||||| || || || ||||||||||| Sbjct 39489 GCAGCTCGAGGATGGCCGTACCTTGTCCGATTACAACATCCAGAAGGAGTCGACTCTTCA 39430 Query 31396 TCTGGTACT 31404 ||| || || Sbjct 39429 TCTTGTCCT 39421 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| |||| ||||| || || || |||| || || | || Sbjct 39120 ATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATTACGCTCGAGGTGGAGTCATCG 39061 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| || || ||| ||||| || | || || || ||| Sbjct 39060 GATACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCAG 39001 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||||| || ||||||||||| ||||| ||||| Sbjct 39000 CAACGTCTCATTTTCGCTGGCAAGCAGTTAGAAGA 38966 >seq13 Length=704243 Score = 118 bits (130), Expect = 9e-22 Identities = 215/312 (69%), Gaps = 2/312 (1%) Strand=Plus/Plus Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 |||||||||| |||||||| ||||| ||||| || ||| || | || || ||| Sbjct 439852 TCGCGTTCGCTGCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCCTCCATCTTCTGGC 439911 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACG 58098 ||||||| ||||| || ||||||||||| || || ||||||| | || ||||| |||| Sbjct 439912 TGAAGAAGCGCGGTCTCATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCGCGTGACG 439971 Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGA-CG 58157 |||| | || || ||||| || ||||| | | |||| | | || | || | | Sbjct 439972 AGGGCATGCACACCGATTTCGCCTGCCTCCTCTTTTCTCTCCTGAACACTCGTCCCAGCA 440031 Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 || ||| || || ||| ||||| || || ||| | ||||| | || || | || Sbjct 440032 AGGAGTCG-GTCCAGGCCATCATCACTGAAGCTGTCACAATCGAGCAGGAATTCCTGACT 440090 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 || || || || || ||||||| |||||| | | |||| | ||||||||| Sbjct 440091 GAGGCTCTGCCTTGCGCTCTGCTCGGCATGAACGCTACCCTCATGTGCCAATACATTGAG 440150 Query 58278 TTTGTTGCCGAC 58289 || ||||||||| Sbjct 440151 TTCGTTGCCGAC 440162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764984691680