Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq5 111 2e-19
seq93 102 8e-17
>seq5
Length=873697
Score = 111 bits (122), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
|| ||||| || | ||| | || ||||| | ||||||||| || |||||||| || ||
Sbjct 38663 TGTCCGCCACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCA 38722
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
| || || |||||| |||||||||||||| |||| ||||| ||||| || ||
Sbjct 38723 GAGAGCGTCCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGT 38782
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
|| ||||| || ||||| ||| || ||| | | || | || ||| | | ||
Sbjct 38783 GGAATGCCCTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGATTCA 38842
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| | ||| | ||||||||||| | || || ||||| || ||||||
Sbjct 38843 ACCTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCATA 38893
>seq93
Length=73557
Score = 102 bits (112), Expect = 8e-17
Identities = 386/600 (64%), Gaps = 7/600 (1%)
Strand=Plus/Minus
Query 153910 CGGGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAA 153969
||||| |||||||| |||||||| | ||| ||| ||||| || || || ||| |
Sbjct 32340 CGGGAGCCTCGTTGGGGCACATCAGCGTCCACTCGCCGTTTTCCTGCACACGCTTCATGA 32281
Query 153970 ATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAA 154029
| | |||||| | ||| || |||| | |||||||| || ||||| ||||
Sbjct 32280 AGAGATCGGGGATCCACAGAGCGTAGAAGAGGTCGCGGGCACGAACCTCTTCCTTGCCGT 32221
Query 154030 TGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTG 154089
||| ||| | || |||| | | | || || |||||||| || | ||| | |
Sbjct 32220 GGTTCTTACGAAGGTCCAAGAAGCCAAATACATCAGCGTGCCACGGCTCGAGGTAGATGG 32161
Query 154090 CTTGAGCGCCTTTACGCTTG---CCGCCCTGATTTACGTGACGCACCATATTGTTGAAAA 154146
| ||| ||| ||||||| || ||||| | |||| || | | |||||| | |
Sbjct 32160 CGAAAGCACCTGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTAGA 32101
Query 154147 CCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCTTGCTGTTGC 154206
| || |||||||| | ||||| | | ||||||||||| ||| | | | |
Sbjct 32100 CACGGAGCATGGGAATGAGACCATTCGATGTACCGTTTGTGCCACCAATGTAGGAGCCGG 32041
Query 154207 GGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGC 154266
| | |||| || || ||||| | ||||||||||| || |||||||||| || |
Sbjct 32040 TGGCACGAATGCGGTGCACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAAGCAC 31981
Query 154267 AATCGTTCAATGTGTTATAGATACCACGAATGCTATCGCTTTCCATGGTCAAT-AGGAAA 154325
| || | ||| | ||||| ||| |||||| || | ||| ||| || |||||
Sbjct 31980 ATGTCTTAAGTGTATCGTAGATTCCATCAATGCTGTCTTCCTTCAT-GTCGATGAGGAAG 31922
Query 154326 CATGAACTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTG 154385
|| || |||||| || | ||| || || || || | || ||| ||||| |||
Sbjct 31921 CAGGACGACATCTGAGGCGATGGGGTACCCGCGTTGAAAAGTGTAGGGGAAGCGTGTGTG 31862
Query 154386 TACATCTT-TGTGCTCAAAAATTTATAAGACTTTATGGCATTATCAATGTCGTCTCCAAA 154444
| ||| || | || | | || | || ||||| || || || || || ||
Sbjct 31861 AAGTACTTCTGCG-ACATGTAGTCGTATGTCTCGATGGCCTTCTCGATATCCTCGCCGTG 31803
Query 154445 GATACCTAGAGCTATACGCATGTGCATGTGTTGAATCCTTTCGGCAACTTTTTCGTTAAT 154504
||| || | ||| | ||||| |||||||||| | ||||||||| || |||| ||
Sbjct 31802 GATGCCGACAGCCACGCGCATCAGCATGTGTTGTGGGCGTTCGGCAACCTTGCCGTTGAT 31743
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496062424996800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |