Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5 111 2e-19 seq93 102 8e-17 >seq5 Length=873697 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || ||||| || | ||| | || ||||| | ||||||||| || |||||||| || || Sbjct 38663 TGTCCGCCACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCA 38722 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || || |||||| |||||||||||||| |||| ||||| ||||| || || Sbjct 38723 GAGAGCGTCCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGT 38782 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || ||| | | || | || ||| | | || Sbjct 38783 GGAATGCCCTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGATTCA 38842 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | ||| | ||||||||||| | || || ||||| || |||||| Sbjct 38843 ACCTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCATA 38893 >seq93 Length=73557 Score = 102 bits (112), Expect = 8e-17 Identities = 386/600 (64%), Gaps = 7/600 (1%) Strand=Plus/Minus Query 153910 CGGGACATTCGTTGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAA 153969 ||||| |||||||| |||||||| | ||| ||| ||||| || || || ||| | Sbjct 32340 CGGGAGCCTCGTTGGGGCACATCAGCGTCCACTCGCCGTTTTCCTGCACACGCTTCATGA 32281 Query 153970 ATATATCGGGAACCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAA 154029 | | |||||| | ||| || |||| | |||||||| || ||||| |||| Sbjct 32280 AGAGATCGGGGATCCACAGAGCGTAGAAGAGGTCGCGGGCACGAACCTCTTCCTTGCCGT 32221 Query 154030 TGTTTCGACGCATGTGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTG 154089 ||| ||| | || |||| | | | || || |||||||| || | ||| | | Sbjct 32220 GGTTCTTACGAAGGTCCAAGAAGCCAAATACATCAGCGTGCCACGGCTCGAGGTAGATGG 32161 Query 154090 CTTGAGCGCCTTTACGCTTG---CCGCCCTGATTTACGTGACGCACCATATTGTTGAAAA 154146 | ||| ||| ||||||| || ||||| | |||| || | | |||||| | | Sbjct 32160 CGAAAGCACCTGGACGCTTGTTGCCACCCTGGTCGACGTAGCGAGCAGTGTTGTTGTAGA 32101 Query 154147 CCCGAAGCATGGGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCTTGCTGTTGC 154206 | || |||||||| | ||||| | | ||||||||||| ||| | | | | Sbjct 32100 CACGGAGCATGGGAATGAGACCATTCGATGTACCGTTTGTGCCACCAATGTAGGAGCCGG 32041 Query 154207 GGCCTCGAACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGC 154266 | | |||| || || ||||| | ||||||||||| || |||||||||| || | Sbjct 32040 TGGCACGAATGCGGTGCACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAAGCAC 31981 Query 154267 AATCGTTCAATGTGTTATAGATACCACGAATGCTATCGCTTTCCATGGTCAAT-AGGAAA 154325 | || | ||| | ||||| ||| |||||| || | ||| ||| || ||||| Sbjct 31980 ATGTCTTAAGTGTATCGTAGATTCCATCAATGCTGTCTTCCTTCAT-GTCGATGAGGAAG 31922 Query 154326 CATGAACTCATCTGCGGAGTTGGAGTGCCGGCAGCAAACATGGTCGGGCTTGCGTGCGTG 154385 || || |||||| || | ||| || || || || | || ||| ||||| ||| Sbjct 31921 CAGGACGACATCTGAGGCGATGGGGTACCCGCGTTGAAAAGTGTAGGGGAAGCGTGTGTG 31862 Query 154386 TACATCTT-TGTGCTCAAAAATTTATAAGACTTTATGGCATTATCAATGTCGTCTCCAAA 154444 | ||| || | || | | || | || ||||| || || || || || || Sbjct 31861 AAGTACTTCTGCG-ACATGTAGTCGTATGTCTCGATGGCCTTCTCGATATCCTCGCCGTG 31803 Query 154445 GATACCTAGAGCTATACGCATGTGCATGTGTTGAATCCTTTCGGCAACTTTTTCGTTAAT 154504 ||| || | ||| | ||||| |||||||||| | ||||||||| || |||| || Sbjct 31802 GATGCCGACAGCCACGCGCATCAGCATGTGTTGTGGGCGTTCGGCAACCTTGCCGTTGAT 31743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062424996800