Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq93 159 5e-34 seq13 158 2e-33 >seq93 Length=73557 Score = 159 bits (176), Expect = 5e-34 Identities = 368/544 (68%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATG-CAATGTCACG 96865 |||||||| | | | ||| || | || |||||| | | ||||| || || | || Sbjct 32061 ACAAACGGTACATCGAATGGTCTCATTCCCATGCTCCGTGTCTACAACAACACTG-CTCG 32119 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| ||||| ||||| || || ||||| ||| | ||| ||||| | || || || Sbjct 32120 CTACGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCTTTCGCCATCTACCTCGAGCCGTG 32179 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||||| || || |||| ||| | || | || || ||| ||| ||||||| || Sbjct 32180 GCACGCTGATGTATTTGGCTTCTTGGACCTTCGTAAGAACCACGGCAAGGAAGAGGTTCG 32239 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGA 97045 ||| | ||| | || || || || ||| | || ||| | ||||||||||| || | || Sbjct 32240 TGCCCGCGACCTCTTCTACGCTCTGTGGATCCCCGATCTCTTCATGAAGCGTGTGCAGGA 32299 Query 97046 CGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGG 97105 ||| | |||| || ||||||||| || | | ||||| || | || || || Sbjct 32300 AAACGGCGAGTGGACGCTGATGTGCCCCAACGAGGCTCCCGGCCTCGCGGACGTCTACGG 32359 Query 97106 CGAAGAGTTTGAGGCCAAGTA-CACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGACGA 97163 || ||||| |||| || ||| | ||| ||| | |||||||| || ||||| | Sbjct 32360 TGATGAGTTCGAGGAGCTCTATCACCG-CTATGAGAAGGAGGGCCGTGGCCGCGAGAC-A 32417 Query 97164 GTCGATGCACGAGAA-CTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCC 97222 || ||| | |||| || ||| | |||||| | ||||||| |||||||| | || Sbjct 32418 GTGCGTGC-CCAGAAGCTTTGGTATGCCATCCTCGAGGCTCAGACGGAGACTGGTAACCC 32476 Query 97223 GTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCAT 97282 | ||| || ||||||||| || || ||||| |||||||| | | || ||||| Sbjct 32477 TTTCATGCTTTACAAGGATGCCTGCAACCGCAAGAGCAACCAGAAGAATCTCGGTACCAT 32536 Query 97283 CAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGT 97342 | ||||||| |||||||| || || | |||||| || | || || ||| || || Sbjct 32537 CCGCAGCTCCAACCTGTGCACTGAGATCATCGAGTACACCGCGCCTGATGAGGTCGCTGT 32596 Query 97343 TTGC 97346 |||| Sbjct 32597 TTGC 32600 >seq13 Length=704243 Score = 158 bits (174), Expect = 2e-33 Identities = 568/887 (64%), Gaps = 66/887 (7%) Strand=Plus/Plus Query 125022 TGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCC 125081 ||| |||||||||| ||||| | || ||||| ||||| | ||||||| | ||||| ||| Sbjct 439394 TGGCAAATGTACAAGAAGGCCGAAGCATCCTTCTGGACAGCCGAAGAGATTGATCTCTCC 439453 Query 125082 AAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCAC 125141 ||||| || |||| ||| | | || |||| || ||||| ||||| || ||| Sbjct 439454 AAGGATCTCCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTCTTTATCTCCCAC 439513 Query 125142 ATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-GTTGACACGATT 125200 | | ||||| || |||| ||| ||||| ||||||||||| || || || || || || Sbjct 439514 GTCCTAGCCTTTTTCGCCGCCTCAGATGGCATCGTCAACGAGAACCTAGTCGA-GCGCTT 439572 Query 125201 CTCTCAAGAGTTGACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGA 125260 ||| || | || || |||| | |||||| ||||| ||||| |||||||| || Sbjct 439573 CTCCGGCGAAGTACAAATACCCGAGGCGAGGTGCTTCTACGGCTTCCAGATCATGATGGA 439632 Query 125261 GAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT--------------- 125305 |||| | ||||| || | |||||| ||||| |||| ||||| Sbjct 439633 GAACATCCACTCAGAGACATACTCTCTGCTGATCGACACCTACATCAGTGAGCCCAAGCA 439692 Query 125306 ---------TC--------GCGATCCGCAAC-GTAA------ACAC-ATGCTCTTTA--- 125337 || || ||| |||| |||| ||| | || ||| | Sbjct 439693 GCGCAAGTATCTTTTCAATGCTATCGACAACAGTAAGTTGCCCCACAACGCGCTTCACAA 439752 Query 125338 -ACGC-----AATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGT 125391 |||| | || ||| || || | || || || ||||| | |||| | || | Sbjct 439753 GACGCGTCTAACGCGTCACAGTTCCATGCATCCGCAAGAAGGCCGACTGGGCTCTGCGAT 439812 Query 125392 GGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGG 125451 ||||| ||| | || || | | || || | || || || ||||| ||||| |||| Sbjct 439813 GGATCTCTGATAAGAACTCCACCTTTGCGAACCGTCTTGTCGCGTTCGCTGCCGTCGAGG 439872 Query 125452 GCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGC 125511 | |||||||| ||| || || ||||||| ||||| ||||||||||| ||||||| Sbjct 439873 GTATCTTCTTCAGTGGTTCCTTCGCCTCCATCTTCTGGCTGAAGAAGCGCGGTCTCATGC 439932 Query 125512 CCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTG 125571 |||| || || | |||||| | || || || ||||||||| | ||| || || | Sbjct 439933 CCGGCCTCACCTTCTCCAACGAGCTCATTTCGCGTGACGAGGGCATGCACACCGATTTCG 439992 Query 125572 CCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC-AGATCCAGCGATGAAAAGGTC 125630 || || || ||| ||| ||| || | | ||||| | || |||| Sbjct 439993 CCTGCCTCCTCTTT--------TCT--CTCCTGAACACTCGTCCCAGCAAGGAGTCGGTC 440042 Query 125631 ATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCG 125690 ||| | || || || || | || || || || || || || || | || || Sbjct 440043 CAGGCCATCATCACTGAAGCTGTCACAATCGAGCAGGAATTCCTGACTGAGGCTCTGCCT 440102 Query 125691 GTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGAT 125750 | || | ||||||||| | || |||||| | ||||| ||||| || || || Sbjct 440103 TGCGCTCTGCTCGGCATGAACGCTACCCTCATGTGCCAATACATTGAGTTCGTTGCCGAC 440162 Query 125751 CGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTC 125810 ||||| || | | | | | |||| | ||||| |||| || ||||| || ||| Sbjct 440163 CGTCTGCTCTTGGCTCTCGGTAACACCAAGGTGTACAATGCCACCAACCCCTTCGACTTC 440222 Query 125811 ATGACCAGCATATCAC--TAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||| || ||||| | | | || ||||||||||| ||||||||| Sbjct 440223 ATG--GAGAATATCTCCTTGGCTGGCAAGACCAACTTCTTCGAGAAG 440267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741056847137040