Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5 140 7e-28 >seq5 Length=873697 Score = 140 bits (154), Expect = 7e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || |||||||| || |||||||| || || ||||||||||| || ||||| ||| Sbjct 38696 GTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTCCTACCGTCTTCCAGCTGTTTACCA 38755 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || ||||| || || || || || || || ||||| | ||| Sbjct 38756 GCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATCTTCGATTTG 38815 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||||||||| | ||| ||||| | || || ||||| || || || || Sbjct 38816 ACGTTATCGATGGTATCGCTCGATTCAACCTCCAAGGTGATGGTCTTGCCGGTGAGAGTC 38875 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 38876 TTCACGAAGATCTGCAT 38892 Score = 134 bits (148), Expect = 3e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||||||||| ||||| || ||||| | || ||||||| || || ||| Sbjct 38924 GTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCCATCTTCTAACTGCTTGCCA 38983 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | || ||||| ||||| || || || |||||||||||||| | || Sbjct 38984 GCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTG 39043 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| | || ||||| || ||||| ||||| ||||| | ||| Sbjct 39044 ACGTTGTCGATGGTATCCGATGACTCCACCTCGAGCGTAATGGTCTTGCCAGTCAATGTC 39103 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 39104 TTGACGAAAATCTGCAT 39120 Score = 96.9 bits (106), Expect = 8e-15 Identities = 138/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 104343 GCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTAC 104402 || |||| || ||||| | ||||| || ||||| ||||| ||||| ||||| || | | Sbjct 39133 GCGTAAG-ACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCGGATAGGGTACGGC 39191 Query 104403 CGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTT 104462 | || || || || || || || || || | | ||| ||||| || || || || || | Sbjct 39192 CATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGAATGCCCTCCT 39251 Query 104463 TATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAA 104522 | ||||||||||| | || ||||| || | ||||||| | || ||||| || || | Sbjct 39252 TGTCCTGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCGACCTCAAGCGTGA 39311 Query 104523 TAGTCTTACCAGT 104535 |||| || || || Sbjct 39312 TAGTTTTGCCGGT 39324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151394652917832