Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq5 140 7e-28
>seq5
Length=873697
Score = 140 bits (154), Expect = 7e-28
Identities = 149/197 (76%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
||||| || |||||||| || |||||||| || || ||||||||||| || ||||| |||
Sbjct 38696 GTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTCCTACCGTCTTCCAGCTGTTTACCA 38755
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||| || ||||| || || || || || || || ||||| | |||
Sbjct 38756 GCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGGATCTTCGATTTG 38815
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | ||||||||| | ||| ||||| | || || ||||| || || || ||
Sbjct 38816 ACGTTATCGATGGTATCGCTCGATTCAACCTCCAAGGTGATGGTCTTGCCGGTGAGAGTC 38875
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 38876 TTCACGAAGATCTGCAT 38892
Score = 134 bits (148), Expect = 3e-26
Identities = 148/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| ||||| ||||||||||| ||||| || ||||| | || ||||||| || || |||
Sbjct 38924 GTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCCATCTTCTAACTGCTTGCCA 38983
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| ||||| || | || ||||| ||||| || || || |||||||||||||| | ||
Sbjct 38984 GCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCCTTATCCTGAATCTTCGACTTG 39043
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
|| || || | |||||| | || ||||| || ||||| ||||| ||||| | |||
Sbjct 39044 ACGTTGTCGATGGTATCCGATGACTCCACCTCGAGCGTAATGGTCTTGCCAGTCAATGTC 39103
Query 104543 TTTACAAATATCTGCAT 104559
|| || || ||||||||
Sbjct 39104 TTGACGAAAATCTGCAT 39120
Score = 96.9 bits (106), Expect = 8e-15
Identities = 138/193 (72%), Gaps = 1/193 (1%)
Strand=Plus/Plus
Query 104343 GCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTAC 104402
|| |||| || ||||| | ||||| || ||||| ||||| ||||| ||||| || | |
Sbjct 39133 GCGTAAG-ACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCGGATAGGGTACGGC 39191
Query 104403 CGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTT 104462
| || || || || || || || || || | | ||| ||||| || || || || || |
Sbjct 39192 CATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGAATGCCCTCCT 39251
Query 104463 TATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAA 104522
| ||||||||||| | || ||||| || | ||||||| | || ||||| || || |
Sbjct 39252 TGTCCTGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCGACCTCAAGCGTGA 39311
Query 104523 TAGTCTTACCAGT 104535
|||| || || ||
Sbjct 39312 TAGTTTTGCCGGT 39324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151394652917832
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |