Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq139 140 2e-28
seq132 111 1e-19
seq226 96.9 2e-15
seq150 96.9 2e-15
seq144 96.9 2e-15
seq36 96.9 2e-15
seq5 89.7 3e-13
>seq139
Length=9664
Score = 140 bits (154), Expect = 2e-28
Identities = 88/95 (93%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 4694 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4635
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| ||||||||||||||||||||||||||||
Sbjct 4634 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4600
>seq132
Length=15117
Score = 111 bits (122), Expect = 1e-19
Identities = 82/96 (85%), Gaps = 5/96 (5%)
Strand=Plus/Minus
Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955
|||||| ||||||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 13861 TAAGCCTATTCCCTTAGCTGTGGTTTCGCTAGATAGTAGATAGGGATAGTAGGAATCTCG 13802
Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| || |||||||||||||||||||| ||||
Sbjct 13801 TTAATCTATTTATGCGCGTCACTAATTAGATAACGA 13766
Score = 102 bits (112), Expect = 5e-17
Identities = 80/96 (83%), Gaps = 5/96 (5%)
Strand=Plus/Minus
Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCG 25955
|||||| ||||||| ||| | ||||||||||||||||||||||| | |||||||
Sbjct 5556 TAAGCCTATTCCCTTAGCTATAGTTTCGCTAGATAGTAGATAGGGATAGTAGGAATCTCG 5497
Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| || |||||||||||||||||||| ||||
Sbjct 5496 TTAATCTATTTATGCGCGTCACTAATTAGATAACGA 5461
>seq226
Length=1320
Score = 96.9 bits (106), Expect = 2e-15
Identities = 79/96 (82%), Gaps = 5/96 (5%)
Strand=Plus/Minus
Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955
||||||||||||||| ||| | |||| ||||||||||||||||| | |||||||
Sbjct 145 TAAGCCCGTTCCCTTAGCTATAGTTTTACTAGATAGTAGATAGGGATAGTAGGAATCTCG 86
Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| || |||||||| ||||||||||| ||||
Sbjct 85 TTAATCTATTTATGCGCGTTACTAATTAGATAACGA 50
>seq150
Length=5836
Score = 96.9 bits (106), Expect = 2e-15
Identities = 79/96 (82%), Gaps = 5/96 (5%)
Strand=Plus/Plus
Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955
||||||||||||||| ||| | |||| ||||||||||||||||| | |||||||
Sbjct 281 TAAGCCCGTTCCCTTAGCTATAGTTTTACTAGATAGTAGATAGGGATAGTAGGAATCTCG 340
Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| || |||||||| ||||||||||| ||||
Sbjct 341 TTAATCTATTTATGCGCGTTACTAATTAGATAACGA 376
>seq144
Length=7156
Score = 96.9 bits (106), Expect = 2e-15
Identities = 79/96 (82%), Gaps = 5/96 (5%)
Strand=Plus/Minus
Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955
|||||| ||||||| ||| | ||||||||||||||||||||||| | |||||||
Sbjct 5559 TAAGCCTATTCCCTTAGCTATAGTTTCGCTAGATAGTAGATAGGGATAGTAGGAATCTCG 5500
Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
|||||| || |||||||| ||||||||||| ||||
Sbjct 5499 TTAATCTATTTATGCGCGTTACTAATTAGATAACGA 5464
>seq36
Length=382292
Score = 96.9 bits (106), Expect = 2e-15
Identities = 197/293 (67%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254
||| | ||||| |||||||| ||| ||| ||| ||||| | || || ||||| |||
Sbjct 183916 GACCCCTTCTATCGCTACAAGATGGAGCGTATCCAGTCCAAGATTGAAGGCAAGGGTAAC 183975
Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314
|| || ||||| ||||| |||||| || |||||| || | |||| ||||| |
Sbjct 183976 GGCATCAAAACTGTCATCGTCAACCTGAGCAGCGTCGCTCAGTCCCTCGCCCGCCCACCT 184035
Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374
| || | || || ||||| | ||| ||||| || ||||| | | | |||
Sbjct 184036 GCTCACGTCATCAAGTACTTCGGCTTCGAGCTTGGAGCCCAGACCAACACCAACCCCAAT 184095
Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434
|||| |||| ||| | || || | || || | |||||| ||||||| ||||||
Sbjct 184096 GACGACCGCTGGATCATCAATGGCGCTCACGACGCCAGCAAGCTCCAGGACTATCTTGAC 184155
Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487
||||| || |||||| || || || | | ||| | || || ||||| ||
Sbjct 184156 GGCTTCATCTCCAAGTTCGTTCTCTGCAAGAAGTGCAAGAATCCCGAGACGGA 184208
>seq5
Length=873697
Score = 89.7 bits (98), Expect = 3e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | |||||| || || ||| ||||| ||||||||||| || |
Sbjct 38892 TACCACCACGGAGACGGAGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCG 38951
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
| | | ||| | || ||||| || || || || || || || ||||| ||||| | |
Sbjct 38952 AGAGAGTACGCCCATCTTCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAG 39011
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || || ||| ||| || ||| || || | || ||||| || |
Sbjct 39012 GGATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGATGACTCCA 39071
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || | ||||| || || || ||||| || || ||||| ||||||||
Sbjct 39072 CCTCGAGCGTAATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334946163129074
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |