Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq139 140 2e-28 seq132 111 1e-19 seq226 96.9 2e-15 seq150 96.9 2e-15 seq144 96.9 2e-15 seq36 96.9 2e-15 seq5 89.7 3e-13 >seq139 Length=9664 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 4694 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 4635 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 4634 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 4600 >seq132 Length=15117 Score = 111 bits (122), Expect = 1e-19 Identities = 82/96 (85%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 |||||| ||||||| ||||||||||||||||||||||||||||| | ||||||| Sbjct 13861 TAAGCCTATTCCCTTAGCTGTGGTTTCGCTAGATAGTAGATAGGGATAGTAGGAATCTCG 13802 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| || |||||||||||||||||||| |||| Sbjct 13801 TTAATCTATTTATGCGCGTCACTAATTAGATAACGA 13766 Score = 102 bits (112), Expect = 5e-17 Identities = 80/96 (83%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCG 25955 |||||| ||||||| ||| | ||||||||||||||||||||||| | ||||||| Sbjct 5556 TAAGCCTATTCCCTTAGCTATAGTTTCGCTAGATAGTAGATAGGGATAGTAGGAATCTCG 5497 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| || |||||||||||||||||||| |||| Sbjct 5496 TTAATCTATTTATGCGCGTCACTAATTAGATAACGA 5461 >seq226 Length=1320 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/96 (82%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 ||||||||||||||| ||| | |||| ||||||||||||||||| | ||||||| Sbjct 145 TAAGCCCGTTCCCTTAGCTATAGTTTTACTAGATAGTAGATAGGGATAGTAGGAATCTCG 86 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| || |||||||| ||||||||||| |||| Sbjct 85 TTAATCTATTTATGCGCGTTACTAATTAGATAACGA 50 >seq150 Length=5836 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/96 (82%), Gaps = 5/96 (5%) Strand=Plus/Plus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 ||||||||||||||| ||| | |||| ||||||||||||||||| | ||||||| Sbjct 281 TAAGCCCGTTCCCTTAGCTATAGTTTTACTAGATAGTAGATAGGGATAGTAGGAATCTCG 340 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| || |||||||| ||||||||||| |||| Sbjct 341 TTAATCTATTTATGCGCGTTACTAATTAGATAACGA 376 >seq144 Length=7156 Score = 96.9 bits (106), Expect = 2e-15 Identities = 79/96 (82%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 25901 TAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCG 25955 |||||| ||||||| ||| | ||||||||||||||||||||||| | ||||||| Sbjct 5559 TAAGCCTATTCCCTTAGCTATAGTTTCGCTAGATAGTAGATAGGGATAGTAGGAATCTCG 5500 Query 25956 TTAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| || |||||||| ||||||||||| |||| Sbjct 5499 TTAATCTATTTATGCGCGTTACTAATTAGATAACGA 5464 >seq36 Length=382292 Score = 96.9 bits (106), Expect = 2e-15 Identities = 197/293 (67%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 6195 GACGCGTTCTACCGCTACAAAATGCCGCGCATCTGCGCCAAGGTCGAGGGTAAGGGAAAC 6254 ||| | ||||| |||||||| ||| ||| ||| ||||| | || || ||||| ||| Sbjct 183916 GACCCCTTCTATCGCTACAAGATGGAGCGTATCCAGTCCAAGATTGAAGGCAAGGGTAAC 183975 Query 6255 GGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCC 6314 || || ||||| ||||| |||||| || |||||| || | |||| ||||| | Sbjct 183976 GGCATCAAAACTGTCATCGTCAACCTGAGCAGCGTCGCTCAGTCCCTCGCCCGCCCACCT 184035 Query 6315 ACCTACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAA 6374 | || | || || ||||| | ||| ||||| || ||||| | | | ||| Sbjct 184036 GCTCACGTCATCAAGTACTTCGGCTTCGAGCTTGGAGCCCAGACCAACACCAACCCCAAT 184095 Query 6375 AACGAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGAC 6434 |||| |||| ||| | || || | || || | |||||| ||||||| |||||| Sbjct 184096 GACGACCGCTGGATCATCAATGGCGCTCACGACGCCAGCAAGCTCCAGGACTATCTTGAC 184155 Query 6435 GGCTTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGA 6487 ||||| || |||||| || || || | | ||| | || || ||||| || Sbjct 184156 GGCTTCATCTCCAAGTTCGTTCTCTGCAAGAAGTGCAAGAATCCCGAGACGGA 184208 >seq5 Length=873697 Score = 89.7 bits (98), Expect = 3e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | | ||| | |||||| || || ||| ||||| ||||||||||| || | Sbjct 38892 TACCACCACGGAGACGGAGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCG 38951 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | ||| | || ||||| || || || || || || || ||||| ||||| | | Sbjct 38952 AGAGAGTACGCCCATCTTCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAG 39011 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || || || ||| ||| || ||| || || | || ||||| || | Sbjct 39012 GGATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGATGACTCCA 39071 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | ||||| || || || ||||| || || ||||| |||||||| Sbjct 39072 CCTCGAGCGTAATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334946163129074