Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 >seq5 Length=873697 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||| || || |||| || |||| |||||||| || Sbjct 39120 ATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATTACGCTCGAGGTGGAGTCATCG 39061 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | ||| | || | ||| || || || || || || || || || Sbjct 39060 GATACCATCGACAACGTCAAGTCGAAGATTCAG-GATAAGGAGGGTATCCCTCCAGATCA 39002 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 || || | ||||| || ||||| || |||||||||| || ||| | || ||||| Sbjct 39001 GCAACGTCTCATTTTCGCTGGCAAGCAGTTAGAAGATGGGCGTACTCTCTCGGACTACAA 38942 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || ||||||||||| || || ||||| Sbjct 38941 TATTCAGAAGGAATCCACGCTCCACTTGGTGCT 38909 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082 |||||||| | ||||| |||| ||||||||||| ||||| ||||| | ||| Sbjct 39608 ACCGGTAAGACTATCACCCTCGAGGTGGAGTCGTCAGACACGATCGACAACGTAAAGAGC 39549 Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142 || ||| ||||| ||||| ||||| || || || ||||| | || || |||||||| Sbjct 39548 AAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGCGCTTGATCTTCGCCGGCAAG 39489 Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202 || | || |||| || || || ||||||||| || || || || || || || ||| Sbjct 39488 CAGCTCGAGGATGGCCGTACCTTGTCCGATTACAACATCCAGAAGGAGTCGACTCTTCAT 39429 Query 25203 TTAGTGCT 25210 | || || Sbjct 39428 CTTGTCCT 39421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| | ||||| || ||||||| | || || || ||| Sbjct 38892 ATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACCTTGGAGGTTGAATCGAGC 38833 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| | || | || || ||| ||||| || || |||||||||||||| Sbjct 38832 GATACCATCGA-TAACGTCAAATCGAAGATCCAAGACAAGGAGGGCATTCCACCTGACCA 38774 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||| || || || ||||| | ||||| | | | || | || ||||| Sbjct 38773 GCAGCGTCTTATCTTCGCTGGTAAACAGCTGGAAGACGGTAGGACGCTCTCTGACTACAA 38714 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || ||||| || || ||||| Sbjct 38713 CATTCAGAAGGAGTCTACGCTGCACTTGGTGCT 38681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433326658579010