Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq5 107 2e-18
>seq5
Length=873697
Score = 107 bits (118), Expect = 2e-18
Identities = 153/213 (72%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||| || || |||| || |||| |||||||| ||
Sbjct 39120 ATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATTACGCTCGAGGTGGAGTCATCG 39061
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| | ||| | || | ||| || || || || || || || || ||
Sbjct 39060 GATACCATCGACAACGTCAAGTCGAAGATTCAG-GATAAGGAGGGTATCCCTCCAGATCA 39002
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
|| || | ||||| || ||||| || |||||||||| || ||| | || |||||
Sbjct 39001 GCAACGTCTCATTTTCGCTGGCAAGCAGTTAGAAGATGGGCGTACTCTCTCGGACTACAA 38942
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||| || ||||||||||| || || |||||
Sbjct 38941 TATTCAGAAGGAATCCACGCTCCACTTGGTGCT 38909
Score = 91.5 bits (100), Expect = 1e-13
Identities = 133/188 (71%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 25023 ACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAGTCACTGAAGCAA 25082
|||||||| | ||||| |||| ||||||||||| ||||| ||||| | |||
Sbjct 39608 ACCGGTAAGACTATCACCCTCGAGGTGGAGTCGTCAGACACGATCGACAACGTAAAGAGC 39549
Query 25083 AAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAA 25142
|| ||| ||||| ||||| ||||| || || || ||||| | || || ||||||||
Sbjct 39548 AAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGCGCTTGATCTTCGCCGGCAAG 39489
Query 25143 CAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACAT 25202
|| | || |||| || || || ||||||||| || || || || || || || |||
Sbjct 39488 CAGCTCGAGGATGGCCGTACCTTGTCCGATTACAACATCCAGAAGGAGTCGACTCTTCAT 39429
Query 25203 TTAGTGCT 25210
| || ||
Sbjct 39428 CTTGTCCT 39421
Score = 89.7 bits (98), Expect = 4e-13
Identities = 149/213 (70%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || |||||| | ||||| || ||||||| | || || || |||
Sbjct 38892 ATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACCTTGGAGGTTGAATCGAGC 38833
Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
|| || ||||| | || | || || ||| ||||| || || ||||||||||||||
Sbjct 38832 GATACCATCGA-TAACGTCAAATCGAAGATCCAAGACAAGGAGGGCATTCCACCTGACCA 38774
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||||| |||| || || || ||||| | ||||| | | | || | || |||||
Sbjct 38773 GCAGCGTCTTATCTTCGCTGGTAAACAGCTGGAAGACGGTAGGACGCTCTCTGACTACAA 38714
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
||||| || || || ||||| || || |||||
Sbjct 38713 CATTCAGAAGGAGTCTACGCTGCACTTGGTGCT 38681
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433326658579010
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |