Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq5 116 3e-21
seq44 104 2e-17
seq9 91.5 1e-13
>seq5
Length=873697
Score = 116 bits (128), Expect = 3e-21
Identities = 144/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| || || || || || || || || | || || || ||||| | |
Sbjct 39120 ATGCAGATTTTCGTCAAGACATTGACTGGCAAGACCATTACGCTCGAGGTGGAGTCATCG 39061
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | ||| | |||| || ||||| || ||||||||||| || || |||||
Sbjct 39060 GATACCATCGACAACGTCAAGTCGAAGATTCAGGATAAGGAGGGTATCCCTCCAGATCAG 39001
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|||||||| || || || ||||| |||||||| ||| || || |||| || |||||
Sbjct 39000 CAACGTCTCATTTTCGCTGGCAAGCAGTTAGAAGATGGGCGTACTCTCTCGGACTACAAT 38941
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || ||||||||
Sbjct 38940 ATTCAGAAGGAATCCAC 38924
Score = 116 bits (128), Expect = 3e-21
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
||||| ||||| |||| ||||| || || | |||||||| | ||| || | ||
Sbjct 39324 ACCGGCAAAACTATCACGCTTGAGGTCGAGTCGTCCGATACCATTGACAATGTTAAGTCG 39265
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| ||||| ||||||||||| ||||| || ||||| || || | || || ||||||||
Sbjct 39264 AAGATTCAGGACAAGGAGGGCATTCCGCCAGATCAGCAGCGCTTGATCTTCGCCGGCAAG 39205
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | |||||| ||| ||| | ||||| ||||| || || || || || || | |||
Sbjct 39204 CAGCTCGAGGATGGCCGTACCCTATCCGACTACAATATCCAGAAGGAGTCTACTCTGCAT 39145
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| || || || ||||||| |||
Sbjct 39144 CTCGTCTTACGCCTGCGCGGTGGT 39121
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || ||| | ||||| || || |||| | || || ||| | | |
Sbjct 38892 ATGCAGATCTTCGTGAAGACTCTCACCGGCAAGACCATCACCTTGGAGGTTGAATCGAGC 38833
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|||||| | || | ||||| || || |||||||||||||| |||||||| || ||
Sbjct 38832 GATACCATCGATAACGTCAAATCGAAGATCCAAGACAAGGAGGGCATTCCACCTGACCAG 38773
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| |||||||| || || || |||||| | || || | || |||| || ||||||
Sbjct 38772 CAGCGTCTTATCTTCGCTGGTAAACAGCTGGAAGACGGTAGGACGCTCTCTGACTACAAC 38713
Query 22399 ATTCAAAAAGAATCCAC 22415
||||| || || || ||
Sbjct 38712 ATTCAGAAGGAGTCTAC 38696
Score = 93.3 bits (102), Expect = 4e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302
|||||||| || |||| || || ||||| | | || || | ||| | | ||
Sbjct 39608 ACCGGTAAGACTATCACCCTCGAGGTGGAGTCGTCAGACACGATCGACAACGTAAAGAGC 39549
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || |||||||| || ||||| |||||||| || || | || || ||||||||
Sbjct 39548 AAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAGCAGCGCTTGATCTTCGCCGGCAAG 39489
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | |||||| ||| ||| | |||||||||||||| || || || || || | |||
Sbjct 39488 CAGCTCGAGGATGGCCGTACCTTGTCCGATTACAACATCCAGAAGGAGTCGACTCTTCAT 39429
Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446
| || | || | ||||| |||
Sbjct 39428 CTTGTCCTCCGCCTTCGCGGTGGT 39405
>seq44
Length=299893
Score = 104 bits (114), Expect = 2e-17
Identities = 110/145 (76%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 22301 AAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCA 22360
|| ||||| |||||||||||| ||||| || || || || |||||||| || |||||||
Sbjct 197928 AATAAATTGTAGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTTATCTTCGCCGGCA 197987
Query 22361 AACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATAC 22420
| ||| | |||||| |||||| ||||||| |||||||| || || || || ||| | |
Sbjct 197988 AGCAGCTCGAGGATGGTCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCGACCCTTC 198047
Query 22421 ATTTAGTTTTGCGATTGCGCGGAGG 22445
| || || | || |||| || ||
Sbjct 198048 ACTTGGTCCTCCGTCTGCGTGGTGG 198072
>seq9
Length=754770
Score = 91.5 bits (100), Expect = 1e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| ||||| || || || || || || || || ||||||||
Sbjct 276289 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAGCGCCTGATTTTCGCCGGCAAG 276230
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415
||| | ||||| ||||||| ||||||| |||||||| || || ||||| ||
Sbjct 276229 CAGCTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAATCGAC 276177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419726700679510
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |