Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq13 109 1e-18 seq16 93.3 9e-14 >seq13 Length=704243 Score = 109 bits (120), Expect = 1e-18 Identities = 269/403 (67%), Gaps = 10/403 (2%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||| ||| ||||| ||||||||||||||||||||| ||| Sbjct 440263 TCGAAGAAGTTGGTCTTGCCAGCCAAGGAGATATTCTCCATGAAGTCGAAGGGGTTGGTG 440204 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 ||||||||| ||||| | || || || | || | ||||| || || ||||| | Sbjct 440203 GCATTGTACACCTTGGTGTTACCGAGAGCCAAGAGCAGACGGTCGGCAACGAACTCAATG 440144 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 || || | ||| || || ||||||||| | || | ||||| | |||||| | | Sbjct 440143 TATTGGCACATGAGGGTAGCGTTCATGCCGAGCAGAGCGCAAGGCAGAGCCTCAGTCAGG 440084 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACC----TGTGCCAGAGA 251798 ||||||| ||| | | || || || | || |||| ||| | | | || Sbjct 440083 AATTCCTGCTCGATTGTGACAGCTTCAGTGATGATGGCCTGGACCGACTCCTTGCTGGGA 440024 Query 251799 CAGCTTGTTCTCCAGCTTTGAGTACAGGA-GCTCGCCAAACTGTTGGTGCAGACCCTCGT 251857 | | |||| ||| || | |||| || || ||| | | ||||| ||||||| Sbjct 440023 C-GAGTGTT---CAGGAGAGAAAAGAGGAGGCAGGCGAAATCGGT-GTGCATGCCCTCGT 439969 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 | || |||| ||||||||| | ||||| ||||| | || || ||| | |||| Sbjct 439968 CACGCGAAATGAGCTCGTTGGAGAAGGTGAGGCCGGGCATGAGACCGCGCTTCTTCAGCC 439909 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGAC 251960 ||||||| | | ||||| ||| ||| | | ||||||||| Sbjct 439908 AGAAGATGGAGGCGAAGGAACCACTGAAGAAGATACCCTCGAC 439866 >seq16 Length=624767 Score = 93.3 bits (102), Expect = 9e-14 Identities = 188/276 (68%), Gaps = 11/276 (4%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || ||| |||| || ||||||||||||||||| || | |||| ||||| || || Sbjct 580397 GTCGGCTCTTTGTCTGGAGGTTGGAAGATGAAGCTAGCTTTGGCTCGTGCCATGCTCATG 580338 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 | ||||||||||| || || || || || ||||| || |||| | |||| || ||| Sbjct 580337 AGGGCCGATGTCCTGCTTCTCGACGAACCTACCAATCATTTGGATGTCGCCAATGTTGCC 580278 Query 279816 TGGCTAGTGTCCTACCT----AACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCA 279871 ||||||| | || || || || | | ||| | || | || || || || Sbjct 580277 TGGCTAGAGCAATATCTGCAGAAGCACACCG-AGA---TCACTAGTTTGATCGTTTCCCA 580222 Query 279872 CGACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAA 279931 |||||| || ||||| || || || ||| | | |||| ||||| ||||| || ||| Sbjct 580221 CGACTCCGGTTTCCTCGACGCTGTTTGCACAGACATCTACCACTACGAGCAGAA---GAA 580165 Query 279932 GCTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGT 279967 ||| | ||| |||||||| ||| ||||| Sbjct 580164 GCTGGTCTGCTACAAGGGCAACCTTGCTGACTTCGT 580129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027833455033614