Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5 192 1e-43 seq13 129 1e-24 >seq5 Length=873697 Score = 192 bits (212), Expect = 1e-43 Identities = 185/235 (79%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287 ||| | ||| || ||||| || | |||||||| ||||| ||||| || || ||||| || Sbjct 38659 TTACTGTCCGCCACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTA 38718 Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347 || ||||| ||||| || ||||| | ||| || || ||||| || || | || ||||| Sbjct 38719 GTCAGAGAGCGTCCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTC 38778 Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-G 68406 ||||||||||| ||||||||||| ||||| | |||||| |||||||| || ||| | Sbjct 38779 AGGTGGAATGCCCTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATC-GCTCG 38837 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || |||||||||||||| || || ||||| ||||| ||||| |||||||| Sbjct 38838 ATTCAACCTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| |||||||| || || || || || || || ||| Sbjct 38894 CCACCACGGAGACGGAGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAG 38953 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||||||||||||| || ||||| ||||| | ||| || || || || Sbjct 38954 AGAGTACGCCCATCTTCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGG 39013 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | ||||||| |||||||| || | ||| || || Sbjct 39014 ATACCCTCCTTATCCTGAATCTTCGACTTGACGTTGTCGATGGTATCCGATGACTCCACC 39073 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || || || | ||||||||||| |||||||| Sbjct 39074 TCGAGCGTAATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120 Score = 131 bits (144), Expect = 3e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | || | || || || ||||| || |||||||| |||||||| Sbjct 39406 CCACCGCGAAGGCGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAC 39465 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| |||||||| || | | || || ||||| ||| Sbjct 39466 AAGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCGGGGGGA 39525 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || ||||| ||| ||| ||||| ||||||| || || || Sbjct 39526 ATGCCTTCCTTGTCCTGGATCTTGCTCTTTACGTTGTCGATCGTGTCTGACGACTCCACC 39585 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439 || | |||||| || || || |||| Sbjct 39586 TCGAGGGTGATAGTCTTACCGGTGA 39610 Score = 93.3 bits (102), Expect = 8e-14 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 177072 AGACCGA-GAATTTGTTTGATGGCAGTAATCTCGGCGTTGTTAGTAATACTAGAC-ACAG 177129 ||||| | |||||| ||||||| |||||||||||| || |||| || | | |||| Sbjct 263705 AGACCCATGAATTT-TTTGATGTTTTGAATCTCGGCGTTCTTCATAAT-CTGGTCGACAG 263648 Query 177130 ACGCATCACGGACATTCAGTAGCTTACCACGGAGGGGGAAAATTCCGTAGCGATCCCGAC 177189 ||| || || ||||| || ||||||||||| | ||||| | |||| | ||||| || Sbjct 263647 TCGCGTCTCGAACATTAAGGAGCTTACCACGCAAAGGGAAGACTCCGAAAAGATCCTGAT 263588 Query 177190 CCACGACAGCAAGGCCAGCTGTGGCAAGCGTGGCGGCAGAGTCACCCTCTGTCAAAATGA 177249 || |||||| | ||||| ||||||| ||| || || ||||| || | ||||| Sbjct 263587 TTACAACAGCACGTCCAGCCAAGGCAAGCACACTGGCTGACTCTCCCTCGGTGAGAATGA 263528 Query 177250 GCGTGCA 177256 | ||||| Sbjct 263527 GGGTGCA 263521 >seq13 Length=704243 Score = 129 bits (142), Expect = 1e-24 Identities = 296/441 (67%), Gaps = 10/441 (2%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || |||||||||||||| |||||| | Sbjct 440300 CATGACACCAGCCTTCTGGTAGTCGCCAACGCGCTTCTCGAAGAAGTTGGTCTTGCCAGC 440241 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 | ||| || |||||||||||| |||||||| ||| || ||||| || ||| Sbjct 440240 CAAGGAGATATTCTCCATGAAGTCGAAGGGGTTGGTGGCATTGTACACCTTGGTGTTACC 440181 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || || | ||||| || |||||||| ||||| |||| ||| ||| | ||| Sbjct 440180 GAGAGCCAAGAGCAGACGGTCGGCAACGAACTCAATGTATTGGCACATGAGGGTAGCGTT 440121 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 |||||| | || ||| || | || || | ||| |||| ||| | | ||| || Sbjct 440120 CATGCCGAGCAGAGCGCAAGGCAGAGCCTCAGTCAGGAATTCCTGCTCGATTGTGACAGC 440061 Query 10175 TTCCTCGACGATGCTCTTTACC----ACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230 ||| || |||| || ||| | | ||||| | ||||| ||| ||| Sbjct 440060 TTCAGTGATGATGGCCTGGACCGACTCCTTGCTGGGAC-GAGTGTTCAGGAG---AGAAA 440005 Query 10231 ACAGGA-GCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGAC 10289 | |||| || | ||| | | ||| | ||||||||| || |||| ||||||||| Sbjct 440004 AGAGGAGGCAGGCGAAATCGGT-GTGCATGCCCTCGTCACGCGAAATGAGCTCGTTGGAG 439946 Query 10290 AAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCG 10349 || || ||||||||||| || || || ||||||||| |||| | ||| || || Sbjct 439945 AAGGTGAGGCCGGGCATGAGACCGCGCTTCTTCAGCCAGAAGATGGAGGCGAAGGAACCA 439886 Query 10350 GAGAACAGAAGACCCTCCACG 10370 ||| | | |||||| ||| Sbjct 439885 CTGAAGAAGATACCCTCGACG 439865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921619473848880