Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq13 246 6e-60 seq93 232 1e-55 >seq13 Length=704243 Score = 246 bits (272), Expect = 6e-60 Identities = 315/428 (74%), Gaps = 7/428 (2%) Strand=Plus/Plus Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AA 42778 ||||||||||| ||||||||| || |||||||||||||||||||||| ||| || Sbjct 439863 GCCGTCGAGGGTATCTTCTTCAGTGGTTCCTTCGCCTCCATCTTCTGGCTGAAGAAGCGC 439922 Query 42779 GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCA 42838 ||| || |||||||| ||||||||||| ||||| ||||| | |||||||| |||| Sbjct 439923 GGTCTC-ATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCGCGTGACGAGGGCATGCA 439981 Query 42839 TAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAG-CCCTCGAAGGAGC 42897 | || || ||||||||||| || || | ||| | ||| | ||| |||||| Sbjct 439982 CACCGATTTCGCCTGCCTCCTCTTTTC---TCTCCTGA-ACACTCGTCCCAGCAAGGAGT 440037 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGC 42957 ||||| |||||||||||| || || || |||||| |||| ||||| || || | | Sbjct 440038 CGGTCCAGGCCATCATCACTGAAGCTGTCACAATCGAGCAGGAATTCCTGACTGAGGCTC 440097 Query 42958 TGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCG 43017 |||| | ||| ||||||||||| |||||||||| | ||||| ||| ||| | Sbjct 440098 TGCCTTGCGCTCTGCTCGGCATGAACGCTACCCTCATGTGCCAATACATTGAGTTCGTTG 440157 Query 43018 CCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCG 43077 |||||| ||| || | | ||| || | | ||||| | | |||||||| Sbjct 440158 CCGACCGTCTGCTCTTGGCTCTCGGTAACACCAAGGTGTACAATGCCACCAACCCCTTCG 440217 Query 43078 ACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCG 43137 |||| |||||||| ||||| |||| |||||||||||||| |||||||||||||| | || Sbjct 440218 ACTTCATGGAGAATATCTCCTTGGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCG 440277 Query 43138 ACTACCAG 43145 |||||||| Sbjct 440278 ACTACCAG 440285 >seq93 Length=73557 Score = 232 bits (256), Expect = 1e-55 Identities = 1200/1889 (64%), Gaps = 93/1889 (5%) Strand=Plus/Minus Query 243735 CCACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794 |||| |||| |||| ||| || ||||||| |||| | |||||||||||||| |||| Sbjct 33528 CCACAGTGAATTGGATGGGAGCAGAGGCGGCCATGGTACGGAGGTAGTACATGCCCGTCT 33469 Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 | ||||| ||| || || |||||||| || | ||| ||| | ||| Sbjct 33468 TTAGTCCGAGCTTCCATCCGGCGAAGTGCATGGAGGTGATCTTGCCCATGGTAGGCT--- 33412 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCT 243914 ||| || || ||| || ||||| ||||||| ||||| | || | Sbjct 33411 ------CCTT---CATGTGGATGTTTAGAGACTGAGATTGGTCGATGAAGGCTCCACGGT 33361 Query 243915 CTGCGGCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGC 243973 | || ||||| || | || | |||||| ||||| | | |||||||| | || | Sbjct 33360 CAGCAGCCATCTGAATAATAGTTCG-CTGAGAGATCTCCCAGACAGTCTTGTATAGGGTC 33302 Query 243974 TTGAGGTGCTCGGGGAACCCTTCGATGTTCTGC-ACCGAGCCCTTGTGGACGATGAGCTG 244032 ||| | |||||||| ||| | ||| | ||||| | | |||||| | Sbjct 33301 TTGGTCTCCTCGGGGATGTTGGGGATCCT-TGCGATAGAGCCACCCTCGGCGATGATACG 33243 Query 244033 GGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTT 244092 | | |||||| ||| ||||| ||||| | | || ||| || ||| ||| Sbjct 33242 GTTCTTCATGTTCTCGGACCACAAGCCCATGTCGACGAGGTCCTTGAGCAGCCATGGGTT 33183 Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152 || ||||||||||| || | || || || || ||||| ||| | || |||||| Sbjct 33182 GACAACCTGAAACTCACCAGCGAGGACTCGACGGGAGTAGATGTTTGAGGTGTACGGCTC 33123 Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAG 244212 || || ||| ||||||| || ||||| | ||| |||||| |||||||| | | || Sbjct 33122 GAAGCACTCGTTGTTGCCAAGGATCTGGGAGGTGGACGCAGTGGGCATGGGAGCAATGAG 33063 Query 244213 CAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCA-GTCCCACA 244271 || ||| | || || ||| || | | ||| ||| ||| | | | || Sbjct 33062 GAGGGAGTTGCGGACACCATGC-------TGAGCAATCTT--CTCCTTCAGCGACGCCCA 33012 Query 244272 TGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGA 244331 ||| ||||||| | ||| | |||||| ||| | || || | || | | Sbjct 33011 GTCCC-AGAGGTCGGTAGGCGTGACGTTCCACATATCATATTGGAGGATGCCTTGAGAAA 32953 Query 244332 CGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCGT 244391 | || ||||||||| ||| || || ||| || || | | ||| | Sbjct 32952 CAGGCGAGCCCTCGTATGTCTTATATGGGCCGAGTTCCTTTGCAATGTCGCAGGAAGAGG 32893 Query 244392 CGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT-GCCG 244450 ||| || || | ||||||||||||||||||| | |||| | | ||| ||| Sbjct 32892 TGAGAGCAGCATGGTAGATGGTCTCGAAGATC------TGAATGTTGAGTTTCTTAGCCT 32839 Query 244451 CAGGTGA-----AGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | ||||| | || | || || | |||| | ||||| || || ||||| || | Sbjct 32838 CCGGTGATTCGAATGGCAGGCGCAGAGCAAGGAAGGCATCGGCGAGACCTTGCACACCCA 32779 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCG-CATGGCT--TCGGGCACGGGGTAAAAGT 244562 |||| || || | ||| || |||| || | || || ||| |||||||| | Sbjct 32778 TGCCAATAGGGCGGTGACGGAAGTTGCTACGACGTGCCTCTTCG---ACGGGGTAGTGAT 32722 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT 244622 || | ||||| | ||| || || || || || | | | ||| ||| |||| || Sbjct 32721 TGACTTCGATAATCTTATTCAGATTACGCGTCACGACCTGAGTGACTTCGTGCAGCTTCT 32662 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682 | |||||| ||||| | || | || || || ||| ||| || | Sbjct 32661 GGAAGTCGAACTCG----------CCACGCTTGTAGTCG--ACGAACGATGGGAGAGCAA 32614 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 |||| |||||| || || ||||| || | |||||||| || ||||| |||| Sbjct 32613 GAGAAGCCAAGTTGCAAACAGCGACCTCATCAGGCGCGGTGTACTCGATGATCTCAGTGC 32554 Query 244743 AGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGT 244802 | ||||| || |||||| || || | || || ||| |||| ||||||||| | Sbjct 32553 ACAGGTTGGAGCTGCGGATGGTACCGAGATTCTTCTGGTTGCTCTTGCGGTTGCAGGCAT 32494 Query 244803 CCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGA 244862 ||||||| |||||||| || || ||||| ||| || |||||| | | ||| | Sbjct 32493 CCTTGTAAAGCATGAAAGGGTTACCAGTCTCCGTCTGAGCCTCGAGGATGGCATACCAAA 32434 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGG 244922 | | | || || ||| ||| | |||||| ||| |||||| || || Sbjct 32433 GCTTCTGGGCACGCACTGTCTCGCGGCCACGGCCCTCCTTCTCATAGCGGTGATAGAGCT 32374 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGG--CACGACGCCGGGCACATGAG 244980 |||||||||| || |||| || | |||||||| | || | |||||||| || Sbjct 32373 CCTCGAACTCATCACCGTAGACGTCCGCGAGGCCGGGAGCCTCGTTG--GGGCACATCAG 32316 Query 244981 ACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTG 245040 ||||||||||| |||| || | || ||||||||| ||||||||||| || || | Sbjct 32315 CGTCCACTCGCCGTTTTCCTGCACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTA 32256 Query 245041 GAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTC 245100 ||||||||| | || | ||| ||| ||| |||||| | || ||||| ||| | Sbjct 32255 GAAGAGGTCGCGGGCACGAACCTCTTCCTTGCCGTGGTTCTTACGAAGGTCCAAGAAGCC 32196 Query 245101 AAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCC 245160 ||| || || ||||||| ||||| | ||||| |||| || || || ||||||||||| Sbjct 32195 AAATACATCAGCGTGCCACGGCTCGAGGTAGATGGCGAAAGCACCTGGACGCTTGTTGCC 32136 Query 245161 TCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGC 245216 |||||||| | | | ||||| |||| ||| || || | || | | | Sbjct 32135 ACCCTGGTCGA----CGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAATGAGAC 32080 Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCC---TGAGGTTGCTGA 245273 | || || ||||| ||||| ||||||| ||| || | | || || ||| Sbjct 32079 CATTCGATGTACCGTTTGTGCCACCAATGTAGGAGCCGGTGGCACGAATGCGG-TGCACG 32021 Query 245274 TGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG 245333 | || | || | ||||| ||| ||||||||| | || || |||| | || || Sbjct 32020 TTGAGA--CCAATACCGCCAGCGGTCTTGGAGATCAAAGCACATGTCTTAAGTGTATCGT 31963 Query 245334 CTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCT 245393 || || || |||||||| |||||||| || || |||||||| |||| ||| ||| Sbjct 31962 AGATTCCATCAATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGAGGCG 31903 Query 245394 TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCT-CGAGAGG 245452 ||| | | || |||||| || || ||| ||||| || ||||| | || ||| | | Sbjct 31902 ATGGGGTACCCGCGTTGAAAAGTGTAGGGGAAGCGTGTGTGAAGTA-CTTCTGCGACATG 31844 Query 245453 AACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCAC-CT 245511 | |||| |||| || ||||| | ||||||||||| | || ||| | Sbjct 31843 TAGTCGTATGTCTCGATGGCCTTCTCGATATCCTCGCCGTGGATGCCGACAGC-CACGCG 31785 Query 245512 CATGAGGGTGTGCTG-GGGCGTCTCGATGGGTCCCTCGGGTCCCTT------GAGCATGT 245564 ||| || |||| || |||||| || || ||| | || || ||| | || Sbjct 31784 CATCAGCATGTGTTGTGGGCGT-TC---GGCAACCTTG---CCGTTGATGCGGAGGAGGT 31732 Query 245565 AGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 | |||||||||||||||||||| || ||| Sbjct 31731 ATGAGCGCTCGAGCGTCTTGAAGCCGAAG 31703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944336201723040