Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq5 102 2e-16 seq13 95.1 3e-14 >seq5 Length=873697 Score = 102 bits (112), Expect = 2e-16 Identities = 350/541 (65%), Gaps = 10/541 (2%) Strand=Plus/Minus Query 297236 TTGTCTACGATGTCTTTTGGATTGTAACTAGGGATATTAGTCGACCAACCGGTACCGATT 297295 || || | ||| || | |||||| | | ||||| | || |||||| |||||||| Sbjct 264761 TTCTCGATGATCTCCATGGGATTGAAGTTGGGGATCTCAGAGCTCCAACCAGTACCGATA 264702 Query 297296 CCACTCGAACCATTCACCAGAATGCTCGGAATAACAGGCACATAATACTCTGGTTCGATC 297355 || || || ||||| | ||||| | |||| || || ||||| ||| ||||||||| Sbjct 264701 CCGCTGGAGCCATTGATGAGAATCGTTGGAAGGACCGGAACATACATCTCAGGTTCGATC 264642 Query 297356 TTGTCACCGTCATCATACAGATATTTCAGAAGATTATCGTCCGTATCGACGAAAACCTGT 297415 |||| ||| ||| | ||||||||| ||| ||| || | | ||||| || Sbjct 264641 TTGTGACCATCAGATTCGCCATATTTCAGGAGAGCATCATCATGAGCATGGAAAATTCGT 264582 Query 297416 CGAGTCTGAGGGT-TCAGTTTTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACC 297474 || | | | ||| || |||| | ||||| | || || ||| ||| ||||| Sbjct 264581 CGTG-CGAACGGTGATAGACGTGTGTAGATATACCTAGCGCTGGCGGCATCGGCGCCACC 264523 Query 297475 CTGCAATCTCGAACCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGAC 297534 || | | ||||||||| | ||| || ||| |||||||||| || ||||| Sbjct 264522 CTTAAGGCGCGAACCGAAGTTGCCACTAGGTTCCAAGTAGTTGATGTTGTTAGAACCGAC 264463 Query 297535 ATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGC 297594 | | ||||||||| || ||||| ||||||| || ||||| || || || | Sbjct 264462 GAAGTTCTGTGCAAGCCCAACAATGGTGCCTTGCATTGACGCTTCACCGTGAGCGTAATC 264403 Query 297595 GCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCG 297654 | || | | ||| ||||| || | | ||||| ||||| || | | || || Sbjct 264402 GGTAGAGCCAGAAACTGAACCGGCGAGTTCAACCACCTTGACGTCCTTCTTGATGTTTCG 264343 Query 297655 CTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGG 297714 | |||| | ||| | |||||||| ||| || || | |||||| | ||||| || Sbjct 264342 CCTGAAGCAAGTATAAAGGACTTTCCGCTGACCGGGCTTTAGACCATCTATAACCGAGGG 264283 Query 297715 AATGCTTCGTTCCAGATCGTACCGC----GAGAACAAAATAAGTTCCTTGTCGATGAAGT 297770 ||| ||| ||||| || | || ||||| | ||| | ||||||| || ||| | Sbjct 264282 AATAGATCG---CAGATTGT-CAGCCATAGAGAAGAGAATGAACTCCTTGTTGACGAAAT 264227 Query 297771 C 297771 | Sbjct 264226 C 264226 >seq13 Length=704243 Score = 95.1 bits (104), Expect = 3e-14 Identities = 172/252 (68%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 |||||||| ||||| || || ||| |||||||| | || ||| | || ||| Sbjct 440049 ATCATCACTGAAGCTGTCACAATCGAGCAGGAATTCCTGACTGAGGCTCTGCCTTGCGCT 440108 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 || | ||||||||| || |||||| | || ||||| || ||||| |||||||| | Sbjct 440109 CTGCTCGGCATGAACGCTACCCTCATGTGCCAATACATTGAGTTCGTTGCCGACCGTCTG 440168 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || | || || ||| | || |||||||| ||| |||||||| | ||| |||||| Sbjct 440169 CTCTTGGCTCTCGGTAACACCAAGGTGTACAATGCCACCAACCCCTTCGACTTCATGGAG 440228 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGC 243741 || || | || || || ||||||||||| ||||| || | || || || Sbjct 440229 AATATCTCCTTGGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGACTACCAGAAG 440288 Query 243742 CCTGGTGTGATG 243753 ||||||| ||| Sbjct 440289 GCTGGTGTCATG 440300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102876410814900