Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq5 138 1e-27 >seq5 Length=873697 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| |||| || |||||| ||||| ||||| |||| || |||| | Sbjct 38677 ACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTCCTACC 38736 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || ||||| ||||||||||| || || ||||||||||| | ||| | || |||||| Sbjct 38737 GTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCCCTCCTT 38796 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 ||| ||| || ||||| | | | || ||||||||||| || || | ||||| Sbjct 38797 GTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGATTCAACCTCCAAGGTGAT 38856 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| ||||| || || ||||| || ||||| ||||| Sbjct 38857 GGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892 Score = 100 bits (110), Expect = 3e-16 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | |||||| || | ||| ||||| ||||||||||| || | ||||| ||| | Sbjct 38905 ACGGAGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCC 38964 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || |||| |||||| |||||||| ||||| || ||||| || | || | | |||||| Sbjct 38965 ATCTTCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCCTT 39024 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170 ||| ||| | || | |||| ||| | | | || || || ||||| |||| ||| Sbjct 39025 ATCC-TGAATCTTCGACTTGA-CGTTGTCGATGGTATCCGATGACTCCACCTCGAGCGTA 39082 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| ||||| || | ||||| || || || ||||| Sbjct 39083 ATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211075299360