Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013-
04-10] 254 sequences; 35,484,281 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq5 138 1e-27
>seq5
Length=873697
Score = 138 bits (152), Expect = 1e-27
Identities = 160/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| |||| || |||||| ||||| ||||| |||| || |||| |
Sbjct 38677 ACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAGAGCGTCCTACC 38736
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
||| || ||||| ||||||||||| || || ||||||||||| | ||| | || ||||||
Sbjct 38737 GTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGAATGCCCTCCTT 38796
Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172
||| ||| || ||||| | | | || ||||||||||| || || | |||||
Sbjct 38797 GTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGATTCAACCTCCAAGGTGAT 38856
Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||| ||||| || || ||||| || ||||| |||||
Sbjct 38857 GGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892
Score = 100 bits (110), Expect = 3e-16
Identities = 156/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052
||| | |||||| || | ||| ||||| ||||||||||| || | ||||| ||| |
Sbjct 38905 ACGGAGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAGAGAGTACGCCC 38964
Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112
|| |||| |||||| |||||||| ||||| || ||||| || | || | | ||||||
Sbjct 38965 ATCTTCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGGATACCCTCCTT 39024
Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTG 42170
||| ||| | || | |||| ||| | | | || || || ||||| |||| |||
Sbjct 39025 ATCC-TGAATCTTCGACTTGA-CGTTGTCGATGGTATCCGATGACTCCACCTCGAGCGTA 39082
Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
||||| ||||| || | ||||| || || || |||||
Sbjct 39083 ATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543211075299360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |