Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq9 102 8e-17 seq5 95.1 1e-14 seq44 84.2 2e-11 >seq9 Length=754770 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||||||| || || |||||||| || | || |||||| |||| || |||||| Sbjct 276171 TGAAGCGTCGATTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGC 276230 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 |||||||| |||| || ||||||||||| || ||||| || || || || || || || Sbjct 276231 TTGCCGGCGAAAATCAGGCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT 276289 >seq5 Length=873697 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 ||||| || | | |||||| | || | ||| || || || ||||||||||| || | | Sbjct 38666 CCGCCACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAG 38725 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || | ||||||| ||||| || || || | || || ||||||||||| || ||| Sbjct 38726 AGCGTCCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGA 38785 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || || || || | ||||| | | || || Sbjct 38786 ATGCCCTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGATTCAACC 38845 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||| || ||||| || ||||| Sbjct 38846 TCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | || || ||||||| ||||| || || || ||||||||||| | Sbjct 39405 ACCACCGCGAAGGCGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGA 39464 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | || || |||||||||||||| | || | |||||||| ||||| || Sbjct 39465 CAAGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCGGGGGG 39524 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTAC 64368 ||| ||||| || || || || || |||||| Sbjct 39525 AATGCCTTCCTTGTCCTGGATCTTGCTCTTTAC 39557 >seq44 Length=299893 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| ||||| || || || |||||||| || | || |||||| | || || |||||| Sbjct 198048 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGACCATCCTCGAGCTGC 197989 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 |||||||| | || || ||||||||||| || ||||| || || || ||| Sbjct 197988 TTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCT 197938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499643213627760