Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq93 192 6e-44 seq13 102 8e-17 seq5 86.0 6e-12 >seq93 Length=73557 Score = 192 bits (212), Expect = 6e-44 Identities = 778/1202 (65%), Gaps = 39/1202 (3%) Strand=Plus/Minus Query 153384 TCGTACGGCATGCGCAGCAGCACA-AAGGCGTCGGCCAGACCCTGGATACCGACGCCGAT 153442 ||| | |||| |||||| |||| ||||| ||||| ||||| || | ||| | ||| || Sbjct 32830 TCGAATGGCAGGCGCAG-AGCAAGGAAGGCATCGGCGAGACCTTGCACACCCATGCCAAT 32772 Query 153443 GGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCG-CTATGGGATAGTGATTGCGATCGA 153501 || || || |||||| || | || ||| | | ||| ||||||||| |||| Sbjct 32771 AGGGCGGTGACGGAAGTTGCTACGACGTGC-CTCTTCGACGGGGTAGTGATTGACTTCGA 32713 Query 153502 TAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCAT 153561 |||| || || || || ||| ||| || | ||| | | | || |||| ||| || Sbjct 32712 TAATCTTATTCAGATTACGCGTCACGACCTGAGTGACTTCGTGCAGCTTCTGGAAGTCGA 32653 Query 153562 AG--GTCA----TTTCGTCGACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTAC 153615 | | || | | ||||||| ||| || | | |||| ||| |||| || | Sbjct 32652 ACTCGCCACGCTTGTAGTCGACGA--ACG-ATGGG---AGAGCAAGAGAAGCCAAGTTGC 32599 Query 153616 AGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCAT 153674 | || || ||| || |||| || |||||| | |||||| | ||| |||||| || Sbjct 32598 AAACAGCGACCTCATCAGGCG-CGGTGTACTCGATGATCTCAGTGCACAGGTTGGAGCTG 32540 Query 153675 TTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATG 153734 ||| || | ||| | ||| ||||| ||||| ||||| || || ||| | |||||| Sbjct 32539 CGGATGGTACCGAGATTCTTCTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAAAGCATG 32480 Query 153735 TACGGTCCGCCGGTCTCGACTTGCGTTTCGACGAT---AAACCTATGCAGGTCCTGCGCT 153791 | || || ||||| || | |||| ||| | ||| | || | ||| || Sbjct 32479 AAAGGGTTACCAGTCTCCGTCTGAGCCTCGAGGATGGCATACCAAAGC---TTCTGGGCA 32423 Query 153792 CGCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAGTCGCTCAAACTCG 153851 ||||| || || |||||||| |||| || || | || || ||| ||||| Sbjct 32422 CGCACTGTCTCGCGGCCACGGCCCTCCTTCTCATAGCGGTGATAGAGCTCCTCGAACTCA 32363 Query 153852 TCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACATATCG 153911 || |||||| ||| |||||||||||| || | || |||||||||| |||| || Sbjct 32362 TCACCGTAGACGTCCGCGAGGCCGGGAGCCTCGTTGGGGCACATCAGCGTCCACTCGCCG 32303 Query 153912 TCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGC 153971 | | | || || |||||| ||||| || | ||| || ||||| | ||||||||| Sbjct 32302 TTTTCCTGCACACGCTTCATGAAGAGATCGGGGATCCACAGAGCGTAGAAGAGGTCGCGG 32243 Query 153972 GCCTTGCAATCCTCCGCGCCCATGTTGCGTTTC--AGATTGAGCACGCTATAGATGTCGG 154029 || || ||| ||| ||| || | || | | | || | | | || | Sbjct 32242 GCACGAACCTCTTCCTTGCCGTGGTT--CTTACGAAGGTCCAAGAAGCCAAATACATCAG 32185 Query 154030 CGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGC---TTTCCGCCCTGATCGA 154086 ||||||| || || | ||||| ||| | |||||| |||| || || ||||| |||| Sbjct 32184 CGTGCCACGGCTCGAGGTAGATGGCGAAAGCACCTGGACGCTTGTTGCCACCCTGGTCGA 32125 Query 154087 CGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTGCGGTGCCGT 154146 ||| ||| | | |||||| |||| || | |||||| || || | | || |||| Sbjct 32124 CGTAGCGAGCAGTGTTGTTGTAGACACGGAGCATGGGAATGAGACCATTCGATGTACCGT 32065 Query 154147 TGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGCCAATGCCGC 154206 | || | || | | |||| ||| || | | |||||||| | ||||| |||| Sbjct 32064 TTGTGCCACCAATGTAGGAGCCGGTGGCACGAATGCGGTGCACGTTGAGACCAATACCGC 32005 Query 154207 CGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTA 154265 | || ||| || || ||| || ||| || || |||||| || || ||||| Sbjct 32004 CAGCGGTCTTGGAGATCAAAGCACATGTC-TTAAGTGTATCGTAGATTCCATCAATGCTG 31946 Query 154266 TCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGG-AATGCGCGTTCCCGC--C 154322 || || | | ||| | ||| || || |||| || || ||| | || ||||| Sbjct 31945 TCTTCCTTCATGTCGATGAGGAAGCAGGACGACATCTGAGGCGATG-GGGTACCCGCGTT 31887 Query 154323 GAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTACGTTTCG 154382 |||||| | |||| ||||| || || || || ||| | ||| || ||| Sbjct 31886 GAAAAGTGTAGGGGA--AGCGTGTGTGAAGTACTTCTGCGACATGTAGTCGTATGTCTCG 31829 Query 154383 ATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGCATGTGCTGC 154442 ||||| | |||||||| |||||||| ||||||| || |||||||| |||||||| || Sbjct 31828 ATGGCCTTCTCGATATCCTCGCCGTGGATGCCGACAGCCACGCGCATCAGCATGTGTTGT 31769 Query 154443 GGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGGTTTTGTAA 154502 || |||||||| || | || || | ||| ||| ||||| || ||| | Sbjct 31768 GGGCGTTCGGCAACCTTGCCGTTGATGCGGAGGAGGTATGAGCGCTCGAGCGTCTTGAAG 31709 Query 154503 CCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCGAGCGTCGCGGCA 154562 ||||| | | ||| | ||||| | |||| | ||||||| | |||| | ||||| Sbjct 31708 CCGAAGAATTGGTAGTTGAAATCGCGGTCATAGACAATGGCCGAGTTGAGCTCCTCGGCA 31649 Query 154563 TG 154564 || Sbjct 31648 TG 31647 >seq13 Length=704243 Score = 102 bits (112), Expect = 8e-17 Identities = 240/363 (66%), Gaps = 17/363 (5%) Strand=Plus/Plus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||||||||| || ||| ||||||| | || ||||| ||||| || ||||||| || Sbjct 439929 ATGCCCGGCCTCACCTTCTCCAACGAGCTCATTTCGCGTGACGAGGGCATGCACACCGAT 439988 Query 52542 TTTGCGTGCCTCTACTA-------CAAGACGCGCGTGACCGAAAAATTGGATTCGGACAC 52594 || || |||||| || | || | ||| | | || ||| |||| Sbjct 439989 TTCGCCTGCCTCCTCTTTTCTCTCCTGAACACTCGTCCCAGCAA----GGAGTCGG---- 440040 Query 52595 GATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCT 52654 ||| | ||| ||| || || || | ||||| |||| || | || | || || Sbjct 440041 --TCCAGGCCATCATCACTGAAGCTGTCACAATCGAGCAGGAATTCCTGACTGAGGCTCT 440098 Query 52655 GCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGC 52714 ||| || ||||| ||||||||||| ||||||| | ||||| ||||| || || Sbjct 440099 GCCTTGCGCTCTGCTCGGCATGAACGCTACCCTCATGTGCCAATACATTGAGTTCGTTGC 440158 Query 52715 GGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGA 52774 || |||||| | || ||||| | | ||| | ||| || ||| || || || Sbjct 440159 CGACCGTCTGCTCTTGGCTCTCGGTAACACCAAGGTGTACAATGCCACCAACCCCTTCGA 440218 Query 52775 GTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGA 52834 || ||| | || || || | | |||||||||||||| ||||||||||| || ||||| Sbjct 440219 CTTCATGGAGAATATCTCCTTGGCTGGCAAGACCAACTTCTTCGAGAAGCGCGTTGGCGA 440278 Query 52835 GTA 52837 || Sbjct 440279 CTA 440281 >seq5 Length=873697 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | |||||||| |||||||||||||| Sbjct 38666 CCGCCACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTAGTCAGAG 38725 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || | ||| || || |||||||| | |||| |||||||| ||||| || || Sbjct 38726 AGCGTCCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTCAGGTGGA 38785 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || ||| | | || | ||| ||| |||| || ||| Sbjct 38786 ATGCCCTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGATTCAACC 38845 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || ||||| || || || |||||||| Sbjct 38846 TCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260824366880