Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq5 113 4e-20 >seq5 Length=873697 Score = 113 bits (124), Expect = 4e-20 Identities = 166/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| ||| || || | || | |||||| || | ||||||||| || ||||| ||||| Sbjct 38660 TACTG-TCCGCCACGAAGACGAAGCACCAAGTGCAGCGTAGACTCCTTCTGAATGTTGTA 38718 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || | ||| | | || || |||||||| |||||| |||| | |||||||| || Sbjct 38719 GTCAGAGAGCGTCCTACCGTCTTCCAGCTGTTTACCAGCGAAGATAAGACGCTGCTGGTC 38778 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACT 127059 || || |||||||||||||| ||| ||| |||| | |||| ||| || | Sbjct 38779 AGGTGGAATGCCCTCCTTGTCTTGGATCTTCGATTTGACGTTATCGATGGTATCGCTCGA 38838 Query 127060 CTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || | ||| | || |||||||| ||||| || || || |||||||| Sbjct 38839 TTCAACCTCCAAGGTGATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCAT 38892 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | ||| || || || ||||||||||| || Sbjct 38894 CCACCACGGAGACGGAGCACCAAGTGGAGCGTGGATTCCTTCTGAATATTGTAGTCCGAG 38953 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| |||| ||| || |||||| | || | || |||||||| ||||| Sbjct 38954 AGAGTACGCCCATCTTCTAACTGCTTGCCAGCGAAAATGAGACGTTGCTGATCTGGAGGG 39013 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||| ||| || ||| ||||| |||| |||| ||| |||| ||| || Sbjct 39014 ATACCCTCCTTATCCTGAATCTTCGACTTGACGTTG-TCGATGGTATCCGATGACTCCAC 39072 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | || ||||| |||| || || || ||||||||||| Sbjct 39073 CTCGAGCGTAATGGTCTTGCCAGTCAATGTCTTGACGAAAATCTGCAT 39120 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || || || | ||| | |||||||| || || |||||||| ||| Sbjct 39122 CCACCGCGCAGGCGTAAGACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCGGAT 39181 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| ||||||| ||||||||||| || || Sbjct 39182 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGCGGA 39241 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| || ||| ||| | | || | ||| || | |||||| Sbjct 39242 ATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCGACC 39301 Query 127067 TCGACGGTCACCGTTTTGCCGGTCA 127091 || | || | ||||||||||||| Sbjct 39302 TCAAGCGTGATAGTTTTGCCGGTCA 39326 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | || | ||| | || ||||| || || || ||||||||| | Sbjct 39406 CCACCGCGAAGGCGGAGGACAAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCGGAC 39465 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || ||| ||||||| |||||||||||||| || Sbjct 39466 AAGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCGGGGGGA 39525 Query 127007 ATGCCCTCCTTGTCCGTGAT-TTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||| ||||||||| ||| || || || |||| |||| ||||| | ||| || Sbjct 39526 ATGCCTTCCTTGTCCTGGATCTTGCTCTTTACGTTG-TCGATCGTGTCTGACGACTCCAC 39584 Query 127066 TTCGACGGTCACCGTTTTGCCGGT 127089 |||| ||| | || || ||||| Sbjct 39585 CTCGAGGGTGATAGTCTTACCGGT 39608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499290284960