Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pyrenochaeta_20sp._20UM_20256_20[genbank_20GCA_5F000359685.1_202013- 04-10] 254 sequences; 35,484,281 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq93 123 2e-23 seq5 93.3 4e-14 >seq93 Length=73557 Score = 123 bits (136), Expect = 2e-23 Identities = 409/628 (65%), Gaps = 11/628 (2%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 ||||| |||||||| ||||| ||||| |||||||| ||| | ||| | ||||| Sbjct 31752 AAGGTTGCCGAACGCCCACAACACATGCTGATGCGCGTGGCTGTCGGCATCCACGGCGAG 31811 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 || ||||| || || | ||| || ||||| | ||||| || || | ||||| ||||| Sbjct 31812 GATATCGAGAAGGCCATCGAGACATACGACTACATGTCGCAGAAGTACTTCACACACGCT 31871 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 || || | ||| ||| || || | ||||||| |||| || || || | || Sbjct 31872 TCCCCTACACTTTTCAACGCGGGTACCCCATCGCCTCAGATGTCGTCCTGCTTCCTCATC 31931 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAAC-TTTGCGCGATTGCGCGTTGAT 123136 | || ||||||||||| || ||||| || || || | | || || ||||| Sbjct 31932 GACATGAAGGAAGACAGCATTGATGGAATCTACGATACACTTAAGACA-TGTGCTTTGAT 31990 Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCG 123196 ||||| | ||||| || || | ||||||||| | | | | | ||| | Sbjct 31991 CTCCAAGACCGCTGGCGGTATTGGTCTCAACGTGCACCGCATTCGTGCCACCGGCTCCTA 32050 Query 123197 CATCAGAAGCACCGACGG--AATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAAT 123254 ||| | |||| |||| |||| | || ||| ||||||| || || ||||| Sbjct 32051 CATTGGTGGCACAAACGGTACATCGAAT--GGTCTCATTCCCATGCTCCGTGTCTACAAC 32108 Query 123255 AACGCCGTGCGGCACGTCGACCAGGGCGG---CAAACGCAAAGGCGCGATGGCGATCTAT 123311 ||| | | || ||||||||||||| || ||| || ||| || | || ||||| Sbjct 32109 AACACTGCTCGCTACGTCGACCAGGGTGGCAACAAGCGTCCAGGTGCTTTCGCCATCTAC 32168 Query 123312 CTAGAACCGTGGCACGTTGATGT-GTACGATTTTTTAAATTTAAAACGCAACATGGGGGC 123370 || || |||||||||| |||||| | | || || | || | | ||| || Sbjct 32169 CTCGAGCCGTGGCACGCTGATGTATTTGGCTTCTTGGACCTTCGTAAG-AACCACGGCAA 32227 Query 123371 GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCG 123430 |||||| |||||||| | || |||||| | ||| | |||||| | || ||| Sbjct 32228 GGAAGAGGTTCGTGCCCGCGACCTCTTCTACGCTCTGTGGATCCCCGATCTCTTCATGAA 32287 Query 123431 ACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAG 123490 || || | || |||||| |||| |||| ||||| ||| | | ||||||| | Sbjct 32288 GCGTGTGCAGGAAAACGGCGAGTGGACGCTGATGTGCCCCAACGAGGCTCCCGGCCTCGC 32347 Query 123491 CGACGTTTACGGCAATCAGTTTGACGAG 123518 ||||| ||||| || |||| || ||| Sbjct 32348 GGACGTCTACGGTGATGAGTTCGAGGAG 32375 >seq5 Length=873697 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | || || |||||||| || || ||||| |||||||| || ||| Sbjct 39119 ATACCACCGCGCAGGCGTAAGACGAGATGCAGAGTAGACTCCTTCTGGATATTGTAGTCG 39178 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | ||||| || ||||| || ||| Sbjct 39179 GATAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATCAAGCGCTGCTGATCTGGC 39238 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 |||||||| || || || ||||| || || | || | ||| ||||| |||||| Sbjct 39239 GGAATGCCCTCCTTGTCCTGAATCTTCGACTTAACATTGTCAATGGTATCGGACGACTCG 39298 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGT 45316 || || || || | ||||||||||| Sbjct 39299 ACCTCAAGCGTGATAGTTTTGCCGGT 39324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452001764889840